Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC116025.1-201ENST00000575404 415 ntTSL 3 BASIC11.33□□□□□ -0.6
COL6A5A8TX70 BX088702.1-201ENST00000610784 235 ntBASIC11.33□□□□□ -0.6
COL6A5A8TX70 AC245369.7-201ENST00000631386 350 ntBASIC11.33□□□□□ -0.6
COL6A5A8TX70 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
COL6A5A8TX70 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
COL6A5A8TX70 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
COL6A5A8TX70 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
COL6A5A8TX70 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
COL6A5A8TX70 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
COL6A5A8TX70 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
COL6A5A8TX70 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 SP100-205ENST00000409824 1802 ntTSL 5 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 R3HDM2P2-201ENST00000401880 2116 ntBASIC11.32□□□□□ -0.6
COL6A5A8TX70 AL121949.1-201ENST00000402043 968 ntBASIC11.32□□□□□ -0.6
COL6A5A8TX70 AL080243.1-201ENST00000423293 1060 ntBASIC11.32□□□□□ -0.6
COL6A5A8TX70 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 IFNWP2-201ENST00000431203 580 ntBASIC11.32□□□□□ -0.6
COL6A5A8TX70 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 GALP-202ENST00000440823 889 ntTSL 5 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 B9D1-206ENST00000461069 923 ntTSL 2 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 RN7SL523P-201ENST00000484401 298 ntBASIC11.32□□□□□ -0.6
COL6A5A8TX70 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 GGNBP1-204ENST00000613113 887 ntBASIC11.32□□□□□ -0.6
COL6A5A8TX70 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 AC005274.1-201ENST00000623460 802 ntBASIC11.32□□□□□ -0.6
COL6A5A8TX70 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 TEKT4P2-202ENST00000559466 1312 ntBASIC11.32□□□□□ -0.6
COL6A5A8TX70 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 UCN3-201ENST00000380433 1200 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 AP000244.1-201ENST00000424582 201 ntBASIC11.32□□□□□ -0.6
COL6A5A8TX70 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 DUX4L50-201ENST00000455245 715 ntBASIC11.32□□□□□ -0.6
COL6A5A8TX70 SEPHS2P1-201ENST00000511618 1162 ntBASIC11.32□□□□□ -0.6
COL6A5A8TX70 AC131206.1-201ENST00000538078 1211 ntBASIC11.32□□□□□ -0.6
COL6A5A8TX70 KRT8P34-201ENST00000577607 1044 ntBASIC11.32□□□□□ -0.6
COL6A5A8TX70 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 AC006547.1-209ENST00000596334 996 ntTSL 5 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC11.32□□□□□ -0.6
COL6A5A8TX70 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
COL6A5A8TX70 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 AC007881.1-201ENST00000437460 187 ntBASIC11.31□□□□□ -0.6
COL6A5A8TX70 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 RRNAD1-204ENST00000476229 1096 ntTSL 5 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
COL6A5A8TX70 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC11.31□□□□□ -0.6
COL6A5A8TX70 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC11.31□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms