Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ATG4BQ9Y4P1 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 AC007292.2-201ENST00000593524 1812 ntBASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 OR8S1-201ENST00000310194 1080 ntBASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 MXI1-205ENST00000393134 889 ntTSL 2 BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 AC245100.3-201ENST00000441281 285 ntBASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 GPR53P-205ENST00000457298 1084 ntBASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 AC106886.1-201ENST00000568660 600 ntBASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 AC025279.2-201ENST00000569730 653 ntBASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 RN7SL48P-201ENST00000579283 293 ntBASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 AL022328.1-201ENST00000610050 478 ntBASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 ENPP7P14-201ENST00000621765 1040 ntBASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
ATG4BQ9Y4P1 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.14
ATG4BQ9Y4P1 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
ATG4BQ9Y4P1 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
ATG4BQ9Y4P1 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
ATG4BQ9Y4P1 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
ATG4BQ9Y4P1 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
ATG4BQ9Y4P1 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
ATG4BQ9Y4P1 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
ATG4BQ9Y4P1 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
ATG4BQ9Y4P1 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.14
ATG4BQ9Y4P1 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
ATG4BQ9Y4P1 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.14
ATG4BQ9Y4P1 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 CLUHP2-201ENST00000426660 1303 ntBASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 PGF-202ENST00000405431 666 ntTSL 5 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 POM121L8P-201ENST00000417732 1281 ntBASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 POM121L9P-203ENST00000441984 1285 ntBASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 AL162274.1-201ENST00000617191 1098 ntBASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 ETV2-208ENST00000621247 941 ntTSL 5 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms