Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC012441.2-201ENST00000444843 739 ntBASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 AC005618.3-201ENST00000624928 458 ntBASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 AC126365.1-201ENST00000578585 1514 ntBASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 SLC9A7P1-201ENST00000554295 3311 ntBASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 REEP5-205ENST00000504247 480 ntTSL 5 BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 AC012158.2-201ENST00000536546 354 ntBASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 AC025262.2-201ENST00000623975 1056 ntBASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 AC244394.1-201ENST00000435000 1665 ntBASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 AC090502.4-201ENST00000551714 1386 ntBASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
SHROOM4Q9ULL8 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
SHROOM4Q9ULL8 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC28.08■■■□□ 2.09
SHROOM4Q9ULL8 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC28.08■■■□□ 2.09
SHROOM4Q9ULL8 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC28.08■■■□□ 2.09
SHROOM4Q9ULL8 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC28.08■■■□□ 2.09
SHROOM4Q9ULL8 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC28.08■■■□□ 2.09
SHROOM4Q9ULL8 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
SHROOM4Q9ULL8 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC28.08■■■□□ 2.09
SHROOM4Q9ULL8 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
SHROOM4Q9ULL8 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
SHROOM4Q9ULL8 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
SHROOM4Q9ULL8 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC28.08■■■□□ 2.09
SHROOM4Q9ULL8 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC28.08■■■□□ 2.09
SHROOM4Q9ULL8 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC28.08■■■□□ 2.09
SHROOM4Q9ULL8 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
SHROOM4Q9ULL8 RN7SL81P-201ENST00000493781 261 ntBASIC28.08■■■□□ 2.09
SHROOM4Q9ULL8 ALG1L6P-201ENST00000515248 758 ntBASIC28.08■■■□□ 2.09
SHROOM4Q9ULL8 DNM1P51-201ENST00000558149 522 ntBASIC28.08■■■□□ 2.09
SHROOM4Q9ULL8 AC007718.1-201ENST00000621078 280 ntBASIC28.08■■■□□ 2.09
SHROOM4Q9ULL8 AC138466.5-201ENST00000624002 808 ntBASIC28.08■■■□□ 2.09
SHROOM4Q9ULL8 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
SHROOM4Q9ULL8 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
SHROOM4Q9ULL8 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
SHROOM4Q9ULL8 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC28.07■■■□□ 2.08
SHROOM4Q9ULL8 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
SHROOM4Q9ULL8 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
SHROOM4Q9ULL8 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
SHROOM4Q9ULL8 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC28.07■■■□□ 2.08
SHROOM4Q9ULL8 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC28.07■■■□□ 2.08
SHROOM4Q9ULL8 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC28.07■■■□□ 2.08
SHROOM4Q9ULL8 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC28.07■■■□□ 2.08
SHROOM4Q9ULL8 ALG1L13P-202ENST00000519320 584 ntBASIC28.07■■■□□ 2.08
SHROOM4Q9ULL8 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC28.07■■■□□ 2.08
SHROOM4Q9ULL8 AC138466.4-201ENST00000623965 852 ntBASIC28.07■■■□□ 2.08
SHROOM4Q9ULL8 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
SHROOM4Q9ULL8 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC28.07■■■□□ 2.08
SHROOM4Q9ULL8 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC28.07■■■□□ 2.08
SHROOM4Q9ULL8 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC28.07■■■□□ 2.08
SHROOM4Q9ULL8 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 MBLAC2-202ENST00000514906 1936 ntBASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 AC073347.1-201ENST00000421633 2643 ntBASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC28.06■■■□□ 2.08
SHROOM4Q9ULL8 RPL8P2-201ENST00000430538 502 ntBASIC28.06■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms