Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 C2orf69P2-201ENST00000562032 1123 ntBASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 MIR4683-201ENST00000579659 81 ntBASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BLOC1S4Q9NUP1 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 GZMB-202ENST00000382540 816 ntTSL 5 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 MPV17-206ENST00000402722 827 ntTSL 3 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 AC103988.2-201ENST00000561804 725 ntBASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 RHOXF1P1-202ENST00000635473 501 ntBASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 GOLGA8DP-202ENST00000341390 2184 ntBASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC16.59■□□□□ 0.25
BLOC1S4Q9NUP1 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC16.58■□□□□ 0.25
BLOC1S4Q9NUP1 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC16.58■□□□□ 0.25
BLOC1S4Q9NUP1 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
BLOC1S4Q9NUP1 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
BLOC1S4Q9NUP1 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
BLOC1S4Q9NUP1 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
BLOC1S4Q9NUP1 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
BLOC1S4Q9NUP1 AL136379.1-201ENST00000623471 2642 ntBASIC16.58■□□□□ 0.25
BLOC1S4Q9NUP1 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
BLOC1S4Q9NUP1 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
BLOC1S4Q9NUP1 AC015656.1-201ENST00000624209 3578 ntBASIC16.58■□□□□ 0.24
BLOC1S4Q9NUP1 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
BLOC1S4Q9NUP1 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC16.58■□□□□ 0.24
BLOC1S4Q9NUP1 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
BLOC1S4Q9NUP1 MIR1202-201ENST00000408529 83 ntBASIC16.58■□□□□ 0.24
BLOC1S4Q9NUP1 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
BLOC1S4Q9NUP1 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC16.58■□□□□ 0.24
BLOC1S4Q9NUP1 AC026954.1-201ENST00000429771 1293 ntBASIC16.58■□□□□ 0.24
BLOC1S4Q9NUP1 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
BLOC1S4Q9NUP1 PFN2-215ENST00000497148 743 ntTSL 4 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms