Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 MPV17-206ENST00000402722 827 ntTSL 3 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 POM121L8P-201ENST00000417732 1281 ntBASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 POM121L9P-203ENST00000441984 1285 ntBASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 MIR4259-201ENST00000584466 101 ntBASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 AC138951.2-201ENST00000623455 1161 ntBASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 AC006453.4-201ENST00000636949 1252 ntBASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 AC091951.1-201ENST00000512854 2465 ntBASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
TRIM39Q9HCM9 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 MPV17-205ENST00000402310 906 ntTSL 5 BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 AC244107.1-201ENST00000442033 332 ntBASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 TPO-203ENST00000346956 2923 ntTSL 5 BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM39Q9HCM9 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRIM39Q9HCM9 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms