Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ZBTB12BP-201ENST00000314232 1122 ntBASIC11.61□□□□□ -0.55
CCDC140Q96MF4 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 SERF2-209ENST00000409646 559 ntTSL 4 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 KRT17P7-201ENST00000451704 1104 ntBASIC11.61□□□□□ -0.55
CCDC140Q96MF4 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 AL022328.1-201ENST00000610050 478 ntBASIC11.61□□□□□ -0.55
CCDC140Q96MF4 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 AL138725.1-201ENST00000407347 1314 ntBASIC11.6□□□□□ -0.55
CCDC140Q96MF4 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 AC007191.1-201ENST00000623179 2995 ntBASIC11.6□□□□□ -0.55
CCDC140Q96MF4 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 AC097359.2-201ENST00000604992 2389 ntBASIC11.6□□□□□ -0.55
CCDC140Q96MF4 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 AP001267.2-201ENST00000532619 2086 ntBASIC11.6□□□□□ -0.55
CCDC140Q96MF4 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 RN7SKP230-201ENST00000365642 335 ntBASIC11.6□□□□□ -0.55
CCDC140Q96MF4 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 AL590640.2-201ENST00000457038 527 ntBASIC11.6□□□□□ -0.55
CCDC140Q96MF4 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 BTNL10-201ENST00000595971 695 ntBASIC11.6□□□□□ -0.55
CCDC140Q96MF4 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 ECM1P1-201ENST00000604092 1279 ntBASIC11.6□□□□□ -0.55
CCDC140Q96MF4 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 AC138696.2-201ENST00000607376 223 ntBASIC11.6□□□□□ -0.55
CCDC140Q96MF4 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 AC138466.3-201ENST00000619983 221 ntBASIC11.6□□□□□ -0.55
CCDC140Q96MF4 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CCDC140Q96MF4 AC011840.2-201ENST00000563063 1520 ntBASIC11.6□□□□□ -0.55
CCDC140Q96MF4 USP28-214ENST00000545540 3431 ntTSL 2 BASIC11.6□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms