Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AP006547.1-201ENST00000563435 692 ntBASIC13.98□□□□□ -0.17
BEST3Q8N1M1 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 AC243960.2-201ENST00000600996 747 ntBASIC13.98□□□□□ -0.17
BEST3Q8N1M1 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 ABBA01031663.1-201ENST00000635630 790 ntBASIC13.98□□□□□ -0.17
BEST3Q8N1M1 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.98□□□□□ -0.17
BEST3Q8N1M1 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 KRT8P44-201ENST00000441609 1350 ntBASIC13.97□□□□□ -0.17
BEST3Q8N1M1 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 AL157414.3-201ENST00000624276 1954 ntBASIC13.97□□□□□ -0.17
BEST3Q8N1M1 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 SNX21-203ENST00000372541 771 ntTSL 2 BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 BTBD6P1-201ENST00000412176 1267 ntBASIC13.97□□□□□ -0.17
BEST3Q8N1M1 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 CNN2P10-201ENST00000443067 918 ntBASIC13.97□□□□□ -0.17
BEST3Q8N1M1 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 AC099548.2-209ENST00000480264 625 ntBASIC13.97□□□□□ -0.17
BEST3Q8N1M1 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 EEF1DP1-201ENST00000585891 896 ntBASIC13.97□□□□□ -0.17
BEST3Q8N1M1 MIR6787-201ENST00000616675 61 ntBASIC13.97□□□□□ -0.17
BEST3Q8N1M1 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 SNX18-202ENST00000343017 3140 ntBASIC13.97□□□□□ -0.17
BEST3Q8N1M1 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
BEST3Q8N1M1 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 AC020907.1-201ENST00000616460 1350 ntBASIC13.96□□□□□ -0.17
BEST3Q8N1M1 TCAF2P1-201ENST00000291129 2421 ntBASIC13.96□□□□□ -0.17
BEST3Q8N1M1 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
BEST3Q8N1M1 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms