Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 CBL-201ENST00000264033 11231 ntAPPRIS P2 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 PI4KB-204ENST00000368875 3983 ntAPPRIS P3 TSL 5 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 PDP1-202ENST00000396200 4358 ntAPPRIS ALT1 TSL 4 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 APBB1-223ENST00000618005 2107 ntTSL 5 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 PSG8-AS1-201ENST00000425668 1873 ntTSL 2 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 KLK2-202ENST00000358049 2847 ntTSL 1 (best) BASIC9.27□□□□□ -0.92
LINC00643Q86TS7 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC9.27□□□□□ -0.92
LINC00643Q86TS7 PLEKHG3-201ENST00000247226 10351 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.92
LINC00643Q86TS7 ALDH18A1-202ENST00000371224 3359 ntAPPRIS P3 TSL 1 (best) BASIC9.27□□□□□ -0.92
LINC00643Q86TS7 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.92
LINC00643Q86TS7 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC9.27□□□□□ -0.92
LINC00643Q86TS7 VSTM4-202ENST00000332853 6392 ntAPPRIS ALT2 TSL 1 (best) BASIC9.27□□□□□ -0.92
LINC00643Q86TS7 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.92
LINC00643Q86TS7 AC005906.2-201ENST00000640877 3408 ntTSL 5 BASIC9.27□□□□□ -0.92
LINC00643Q86TS7 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 IFT122-204ENST00000349441 3569 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 TRERF1-202ENST00000354325 4138 ntTSL 5 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 BANK1-202ENST00000428908 3044 ntTSL 5 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 ENOX2-201ENST00000338144 4263 ntTSL 2 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 ADM2-202ENST00000395738 4276 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 GREB1-201ENST00000234142 8444 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 PTCH1-209ENST00000437951 8049 ntTSL 5 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 EXOC8-201ENST00000366645 5100 ntAPPRIS P1 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 ERCC6L2-201ENST00000288985 4564 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 KIAA0368-202ENST00000338205 7078 ntAPPRIS ALT2 TSL 5 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 ERP44-201ENST00000262455 4854 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 TGFBRAP1-203ENST00000595531 5595 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 SNX22-201ENST00000325881 3614 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 NTRK2-208ENST00000395882 7111 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 RC3H2-201ENST00000335387 3081 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 GADL1-201ENST00000282538 3759 ntAPPRIS P1 TSL 5 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 HAS3-202ENST00000306560 4220 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 ST5-201ENST00000313726 4507 ntAPPRIS P4 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 GPR176-201ENST00000299092 3844 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 JTB-203ENST00000368589 1216 ntTSL 2 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 MESTP1-201ENST00000404287 994 ntBASIC9.27□□□□□ -0.93
LINC00643Q86TS7 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 AC016769.1-201ENST00000409132 1010 ntBASIC9.27□□□□□ -0.93
LINC00643Q86TS7 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 AF201337.1-201ENST00000520239 748 ntBASIC9.27□□□□□ -0.93
LINC00643Q86TS7 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 TK2-208ENST00000545043 1120 ntTSL 2 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 AC087641.1-201ENST00000557561 1021 ntBASIC9.27□□□□□ -0.93
LINC00643Q86TS7 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 LINC01023-201ENST00000606054 436 ntBASIC9.27□□□□□ -0.93
LINC00643Q86TS7 PANK2-206ENST00000497424 4815 ntTSL 2 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 CTRC-201ENST00000375943 3147 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 SLC27A6-203ENST00000506176 2294 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 PAX2-203ENST00000370296 4140 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 PAX2-205ENST00000428433 4126 ntTSL 5 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 FBF1-210ENST00000592193 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 TMEM164-204ENST00000372073 5567 ntAPPRIS P3 TSL 5 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 LGR6-203ENST00000367278 3567 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 TXLNA-202ENST00000373610 4854 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 C17orf53-202ENST00000319977 2725 ntAPPRIS P3 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 NLRX1-214ENST00000525863 2850 ntTSL 5 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 CDK20-209ENST00000605159 1860 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 PTPN6-202ENST00000399448 2159 ntAPPRIS P3 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 IYD-208ENST00000500320 2158 ntTSL 2 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 RPS15A-213ENST00000576436 2190 ntTSL 4 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 ANKRD26-202ENST00000436985 6827 ntAPPRIS ALT2 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 PDE7B-201ENST00000308191 5390 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 BAIAP3-204ENST00000426824 3930 ntAPPRIS ALT2 TSL 2 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 KIAA1324-210ENST00000529753 2903 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 GPD1-201ENST00000301149 3082 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 HYOU1-221ENST00000621959 3358 ntTSL 2 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 CD27-AS1-209ENST00000545339 1766 ntTSL 5 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 CACNA2D3-AS1-201ENST00000471265 2078 ntTSL 2 BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
LINC00643Q86TS7 PCDHA6-201ENST00000378126 3267 ntBASIC9.27□□□□□ -0.93
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms