Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 AL592076.1-201ENST00000424448 303 ntBASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 AC010976.2-201ENST00000609697 852 ntBASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 AC027601.3-201ENST00000622907 509 ntBASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 RN7SKP109-201ENST00000410592 316 ntBASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 AQP7P5-201ENST00000428759 1049 ntBASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 AQP7P4-201ENST00000447083 1042 ntBASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 AQP7P2-201ENST00000453967 1041 ntBASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 AQP7P3-201ENST00000624547 1041 ntBASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC88AQ3V6T2 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 LINC00528-201ENST00000600723 2160 ntBASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC88AQ3V6T2 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 CD164-210ENST00000512821 964 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC88AQ3V6T2 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms