Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC13.47□□□□□ -0.25
SCN1BQ07699 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
SCN1BQ07699 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC13.47□□□□□ -0.25
SCN1BQ07699 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
SCN1BQ07699 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC13.47□□□□□ -0.25
SCN1BQ07699 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
SCN1BQ07699 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 AMT-224ENST00000635808 1610 ntTSL 5 BASIC13.46□□□□□ -0.25
SCN1BQ07699 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC13.46□□□□□ -0.25
SCN1BQ07699 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
SCN1BQ07699 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
SCN1BQ07699 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 MIR346-201ENST00000362234 95 ntBASIC13.46□□□□□ -0.25
SCN1BQ07699 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 AC004987.2-201ENST00000395959 1148 ntBASIC13.46□□□□□ -0.25
SCN1BQ07699 MKNK2P1-201ENST00000437526 628 ntBASIC13.46□□□□□ -0.25
SCN1BQ07699 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 ELP6-209ENST00000446787 894 ntTSL 3 BASIC13.46□□□□□ -0.25
SCN1BQ07699 AL139010.1-201ENST00000454878 894 ntBASIC13.46□□□□□ -0.25
SCN1BQ07699 TPT1P11-201ENST00000458482 498 ntBASIC13.46□□□□□ -0.25
SCN1BQ07699 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC13.46□□□□□ -0.25
SCN1BQ07699 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC13.46□□□□□ -0.25
SCN1BQ07699 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC13.46□□□□□ -0.25
SCN1BQ07699 LINC01225-203ENST00000563550 1244 ntBASIC13.46□□□□□ -0.25
SCN1BQ07699 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC13.46□□□□□ -0.25
SCN1BQ07699 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC13.46□□□□□ -0.25
SCN1BQ07699 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
SCN1BQ07699 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
SCN1BQ07699 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.46□□□□□ -0.25
SCN1BQ07699 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SCN1BQ07699 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
SCN1BQ07699 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC13.46□□□□□ -0.25
SCN1BQ07699 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
SCN1BQ07699 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
SCN1BQ07699 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SCN1BQ07699 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC13.46□□□□□ -0.26
SCN1BQ07699 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SCN1BQ07699 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.26
SCN1BQ07699 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SCN1BQ07699 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC13.46□□□□□ -0.26
SCN1BQ07699 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
SCN1BQ07699 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.26
SCN1BQ07699 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC13.46□□□□□ -0.26
SCN1BQ07699 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
SCN1BQ07699 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
SCN1BQ07699 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC13.46□□□□□ -0.26
SCN1BQ07699 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SCN1BQ07699 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
SCN1BQ07699 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC13.46□□□□□ -0.26
SCN1BQ07699 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.46□□□□□ -0.26
SCN1BQ07699 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
SCN1BQ07699 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
SCN1BQ07699 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.46□□□□□ -0.26
SCN1BQ07699 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC13.46□□□□□ -0.26
SCN1BQ07699 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SCN1BQ07699 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SCN1BQ07699 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
SCN1BQ07699 AP3S2-216ENST00000617003 1561 ntBASIC13.45□□□□□ -0.26
SCN1BQ07699 CICP11-201ENST00000434745 2827 ntBASIC13.45□□□□□ -0.26
SCN1BQ07699 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
SCN1BQ07699 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SCN1BQ07699 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SCN1BQ07699 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
SCN1BQ07699 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC13.45□□□□□ -0.26
SCN1BQ07699 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
SCN1BQ07699 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
SCN1BQ07699 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SCN1BQ07699 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC13.45□□□□□ -0.26
SCN1BQ07699 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13.45□□□□□ -0.26
SCN1BQ07699 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SCN1BQ07699 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
SCN1BQ07699 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
SCN1BQ07699 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SCN1BQ07699 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SCN1BQ07699 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC13.45□□□□□ -0.26
SCN1BQ07699 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
SCN1BQ07699 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC13.45□□□□□ -0.26
SCN1BQ07699 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC13.45□□□□□ -0.26
SCN1BQ07699 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC13.45□□□□□ -0.26
SCN1BQ07699 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms