Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
FOXA1P55317 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.54□□□□□ -0.08
FOXA1P55317 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
FOXA1P55317 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
FOXA1P55317 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC14.53□□□□□ -0.08
FOXA1P55317 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
FOXA1P55317 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC14.53□□□□□ -0.08
FOXA1P55317 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
FOXA1P55317 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
FOXA1P55317 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.53□□□□□ -0.08
FOXA1P55317 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.53□□□□□ -0.08
FOXA1P55317 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 KRT8P22-201ENST00000562317 1415 ntBASIC14.53□□□□□ -0.08
FOXA1P55317 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
FOXA1P55317 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.53□□□□□ -0.08
FOXA1P55317 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.53□□□□□ -0.08
FOXA1P55317 AC134915.1-201ENST00000426461 574 ntBASIC14.53□□□□□ -0.08
FOXA1P55317 EIF3FP3-201ENST00000434851 1086 ntBASIC14.53□□□□□ -0.08
FOXA1P55317 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.53□□□□□ -0.08
FOXA1P55317 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.53□□□□□ -0.08
FOXA1P55317 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
FOXA1P55317 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC14.53□□□□□ -0.08
FOXA1P55317 RRP7BP-205ENST00000566851 833 ntBASIC14.53□□□□□ -0.08
FOXA1P55317 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.53□□□□□ -0.08
FOXA1P55317 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.53□□□□□ -0.08
FOXA1P55317 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.53□□□□□ -0.08
FOXA1P55317 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.53□□□□□ -0.08
FOXA1P55317 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.53□□□□□ -0.08
FOXA1P55317 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
FOXA1P55317 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.53□□□□□ -0.08
FOXA1P55317 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
FOXA1P55317 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC14.53□□□□□ -0.08
FOXA1P55317 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14.53□□□□□ -0.08
FOXA1P55317 AC011474.4-201ENST00000623523 2076 ntBASIC14.53□□□□□ -0.08
FOXA1P55317 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
FOXA1P55317 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
FOXA1P55317 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
FOXA1P55317 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
FOXA1P55317 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
FOXA1P55317 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
FOXA1P55317 CICP16-201ENST00000502609 2813 ntBASIC14.52□□□□□ -0.08
FOXA1P55317 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC14.52□□□□□ -0.08
FOXA1P55317 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
FOXA1P55317 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.52□□□□□ -0.08
FOXA1P55317 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.52□□□□□ -0.08
FOXA1P55317 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
FOXA1P55317 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
FOXA1P55317 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
FOXA1P55317 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
FOXA1P55317 SLC7A15P-201ENST00000424028 1363 ntBASIC14.52□□□□□ -0.08
FOXA1P55317 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.52□□□□□ -0.08
FOXA1P55317 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
FOXA1P55317 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.52□□□□□ -0.08
FOXA1P55317 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
FOXA1P55317 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
FOXA1P55317 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
FOXA1P55317 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
FOXA1P55317 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
FOXA1P55317 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.52□□□□□ -0.09
FOXA1P55317 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
FOXA1P55317 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.52□□□□□ -0.09
FOXA1P55317 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
FOXA1P55317 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
FOXA1P55317 PNMT-202ENST00000394246 821 ntTSL 2 BASIC14.52□□□□□ -0.09
FOXA1P55317 C1QBPP1-201ENST00000400117 770 ntBASIC14.52□□□□□ -0.09
FOXA1P55317 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.52□□□□□ -0.09
FOXA1P55317 AC098850.1-201ENST00000419919 790 ntBASIC14.52□□□□□ -0.09
FOXA1P55317 BASP1P1-201ENST00000430708 665 ntBASIC14.52□□□□□ -0.09
FOXA1P55317 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.52□□□□□ -0.09
FOXA1P55317 UGT1A2P-201ENST00000454886 866 ntBASIC14.52□□□□□ -0.09
FOXA1P55317 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
FOXA1P55317 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
FOXA1P55317 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.52□□□□□ -0.09
FOXA1P55317 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
FOXA1P55317 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.52□□□□□ -0.09
FOXA1P55317 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.52□□□□□ -0.09
FOXA1P55317 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.52□□□□□ -0.09
FOXA1P55317 AL359711.2-201ENST00000563105 872 ntBASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms