Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH6P52701 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC20.34■□□□□ 0.85
MSH6P52701 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
MSH6P52701 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
MSH6P52701 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
MSH6P52701 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
MSH6P52701 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 MIR1301-201ENST00000408518 82 ntBASIC20.34■□□□□ 0.85
MSH6P52701 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
MSH6P52701 ACE-203ENST00000413513 2237 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH6P52701 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC20.34■□□□□ 0.85
MSH6P52701 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH6P52701 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH6P52701 RBM4-207ENST00000506523 654 ntTSL 3 BASIC20.34■□□□□ 0.85
MSH6P52701 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH6P52701 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC20.34■□□□□ 0.85
MSH6P52701 AC093826.1-201ENST00000508655 993 ntBASIC20.34■□□□□ 0.85
MSH6P52701 GDNF-207ENST00000515058 764 ntTSL 5 BASIC20.34■□□□□ 0.85
MSH6P52701 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC20.34■□□□□ 0.85
MSH6P52701 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH6P52701 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH6P52701 SIGLEC22P-201ENST00000599104 714 ntBASIC20.34■□□□□ 0.85
MSH6P52701 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC20.34■□□□□ 0.85
MSH6P52701 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC20.34■□□□□ 0.85
MSH6P52701 AC138932.1-201ENST00000534164 6830 ntBASIC20.33■□□□□ 0.85
MSH6P52701 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
MSH6P52701 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
MSH6P52701 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC20.33■□□□□ 0.85
MSH6P52701 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
MSH6P52701 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
MSH6P52701 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC20.33■□□□□ 0.84
MSH6P52701 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.33■□□□□ 0.84
MSH6P52701 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
MSH6P52701 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
MSH6P52701 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
MSH6P52701 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC20.33■□□□□ 0.84
MSH6P52701 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC20.33■□□□□ 0.84
MSH6P52701 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC20.33■□□□□ 0.84
MSH6P52701 MIR645-201ENST00000385283 94 ntBASIC20.33■□□□□ 0.84
MSH6P52701 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC20.33■□□□□ 0.84
MSH6P52701 CELP-201ENST00000411440 1249 ntTSL 5 BASIC20.33■□□□□ 0.84
MSH6P52701 AC108734.2-201ENST00000420887 1069 ntBASIC20.33■□□□□ 0.84
MSH6P52701 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
MSH6P52701 RGS5-216ENST00000449680 788 ntTSL 3 BASIC20.33■□□□□ 0.84
MSH6P52701 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC20.33■□□□□ 0.84
MSH6P52701 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC20.33■□□□□ 0.84
MSH6P52701 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
MSH6P52701 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC20.33■□□□□ 0.84
MSH6P52701 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC20.33■□□□□ 0.84
MSH6P52701 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
MSH6P52701 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC20.33■□□□□ 0.84
MSH6P52701 AL118522.1-201ENST00000611368 560 ntBASIC20.33■□□□□ 0.84
MSH6P52701 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC20.33■□□□□ 0.84
MSH6P52701 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
MSH6P52701 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH6P52701 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH6P52701 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC20.32■□□□□ 0.84
MSH6P52701 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH6P52701 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC20.32■□□□□ 0.84
MSH6P52701 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH6P52701 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC20.32■□□□□ 0.84
MSH6P52701 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
MSH6P52701 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
MSH6P52701 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH6P52701 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC20.32■□□□□ 0.84
MSH6P52701 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MSH6P52701 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH6P52701 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH6P52701 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
MSH6P52701 AC009090.5-201ENST00000624886 2285 ntBASIC20.32■□□□□ 0.84
MSH6P52701 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC20.32■□□□□ 0.84
MSH6P52701 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH6P52701 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH6P52701 TEKT4P2-202ENST00000559466 1312 ntBASIC20.32■□□□□ 0.84
MSH6P52701 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
MSH6P52701 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC20.32■□□□□ 0.84
MSH6P52701 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH6P52701 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC20.32■□□□□ 0.84
MSH6P52701 HLA-DPA2-205ENST00000433582 733 ntBASIC20.32■□□□□ 0.84
MSH6P52701 KRT18P46-201ENST00000435568 1279 ntBASIC20.32■□□□□ 0.84
MSH6P52701 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH6P52701 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC20.32■□□□□ 0.84
MSH6P52701 IGHEP1-201ENST00000521393 651 ntBASIC20.32■□□□□ 0.84
MSH6P52701 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
MSH6P52701 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC20.32■□□□□ 0.84
MSH6P52701 USB1-205ENST00000561743 1135 ntTSL 3 BASIC20.32■□□□□ 0.84
MSH6P52701 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC20.32■□□□□ 0.84
MSH6P52701 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MSH6P52701 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms