Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
LIG3P49916 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIG3P49916 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC15.9■□□□□ 0.14
LIG3P49916 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.9■□□□□ 0.14
LIG3P49916 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC15.9■□□□□ 0.14
LIG3P49916 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC15.9■□□□□ 0.14
LIG3P49916 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIG3P49916 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC15.9■□□□□ 0.14
LIG3P49916 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIG3P49916 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC15.9■□□□□ 0.14
LIG3P49916 CRB3P1-201ENST00000449338 276 ntBASIC15.9■□□□□ 0.14
LIG3P49916 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.9■□□□□ 0.14
LIG3P49916 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.9■□□□□ 0.14
LIG3P49916 COX11-202ENST00000571584 1108 ntTSL 2 BASIC15.9■□□□□ 0.14
LIG3P49916 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIG3P49916 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.9■□□□□ 0.14
LIG3P49916 AL450472.2-201ENST00000603663 1156 ntBASIC15.9■□□□□ 0.14
LIG3P49916 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.9■□□□□ 0.14
LIG3P49916 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIG3P49916 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.9■□□□□ 0.14
LIG3P49916 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LIG3P49916 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.9■□□□□ 0.14
LIG3P49916 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIG3P49916 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIG3P49916 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
LIG3P49916 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIG3P49916 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIG3P49916 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.9■□□□□ 0.14
LIG3P49916 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.9■□□□□ 0.14
LIG3P49916 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC15.9■□□□□ 0.14
LIG3P49916 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
LIG3P49916 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC15.9■□□□□ 0.14
LIG3P49916 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LIG3P49916 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LIG3P49916 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.89■□□□□ 0.13
LIG3P49916 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.89■□□□□ 0.13
LIG3P49916 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.89■□□□□ 0.13
LIG3P49916 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
LIG3P49916 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC15.89■□□□□ 0.13
LIG3P49916 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LIG3P49916 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
LIG3P49916 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
LIG3P49916 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC15.89■□□□□ 0.13
LIG3P49916 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LIG3P49916 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.89■□□□□ 0.13
LIG3P49916 CALY-202ENST00000368555 783 ntTSL 2 BASIC15.89■□□□□ 0.13
LIG3P49916 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
LIG3P49916 AC015922.1-201ENST00000421102 1152 ntBASIC15.89■□□□□ 0.13
LIG3P49916 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC15.89■□□□□ 0.13
LIG3P49916 TARDBPP1-201ENST00000442013 1203 ntBASIC15.89■□□□□ 0.13
LIG3P49916 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.89■□□□□ 0.13
LIG3P49916 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC15.89■□□□□ 0.13
LIG3P49916 TIMM17BP1-201ENST00000545713 516 ntBASIC15.89■□□□□ 0.13
LIG3P49916 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.89■□□□□ 0.13
LIG3P49916 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.89■□□□□ 0.13
LIG3P49916 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC15.89■□□□□ 0.13
LIG3P49916 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.89■□□□□ 0.13
LIG3P49916 AL132655.2-201ENST00000596276 594 ntBASIC15.89■□□□□ 0.13
LIG3P49916 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.89■□□□□ 0.13
LIG3P49916 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC15.89■□□□□ 0.13
LIG3P49916 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
LIG3P49916 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LIG3P49916 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
LIG3P49916 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
LIG3P49916 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.89■□□□□ 0.13
LIG3P49916 AC092135.3-201ENST00000624151 1846 ntBASIC15.89■□□□□ 0.13
LIG3P49916 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
LIG3P49916 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
LIG3P49916 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
LIG3P49916 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
LIG3P49916 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
LIG3P49916 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIG3P49916 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.88■□□□□ 0.13
LIG3P49916 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
LIG3P49916 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LIG3P49916 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LIG3P49916 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
LIG3P49916 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC15.88■□□□□ 0.13
LIG3P49916 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 1714.3 ms