Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC15.16■□□□□ 0.02
PTPN4P29074 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
PTPN4P29074 AC087386.2-201ENST00000623212 4637 ntBASIC15.16■□□□□ 0.02
PTPN4P29074 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
PTPN4P29074 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC15.16■□□□□ 0.02
PTPN4P29074 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
PTPN4P29074 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
PTPN4P29074 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.16■□□□□ 0.02
PTPN4P29074 RPL5P21-201ENST00000404620 815 ntBASIC15.16■□□□□ 0.02
PTPN4P29074 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
PTPN4P29074 MEP1AP4-201ENST00000423244 1087 ntBASIC15.16■□□□□ 0.02
PTPN4P29074 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC15.16■□□□□ 0.02
PTPN4P29074 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC15.16■□□□□ 0.02
PTPN4P29074 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.16■□□□□ 0.02
PTPN4P29074 SPDYE18-201ENST00000510091 1050 ntBASIC15.16■□□□□ 0.02
PTPN4P29074 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.16■□□□□ 0.02
PTPN4P29074 AC055876.2-201ENST00000531834 546 ntBASIC15.16■□□□□ 0.02
PTPN4P29074 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC15.16■□□□□ 0.02
PTPN4P29074 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC15.16■□□□□ 0.02
PTPN4P29074 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC15.16■□□□□ 0.02
PTPN4P29074 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.16■□□□□ 0.02
PTPN4P29074 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC15.16■□□□□ 0.02
PTPN4P29074 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.16■□□□□ 0.02
PTPN4P29074 AL359881.2-201ENST00000602973 570 ntBASIC15.16■□□□□ 0.02
PTPN4P29074 SRD5A3P1-201ENST00000603021 949 ntBASIC15.16■□□□□ 0.02
PTPN4P29074 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.16■□□□□ 0.02
PTPN4P29074 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
PTPN4P29074 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC15.16■□□□□ 0.02
PTPN4P29074 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC15.16■□□□□ 0.02
PTPN4P29074 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
PTPN4P29074 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC15.16■□□□□ 0.02
PTPN4P29074 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
PTPN4P29074 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.16■□□□□ 0.02
PTPN4P29074 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.16■□□□□ 0.02
PTPN4P29074 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.16■□□□□ 0.02
PTPN4P29074 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
PTPN4P29074 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.16■□□□□ 0.02
PTPN4P29074 AL691432.1-201ENST00000596308 1422 ntBASIC15.16■□□□□ 0.02
PTPN4P29074 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
PTPN4P29074 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.16■□□□□ 0.02
PTPN4P29074 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
PTPN4P29074 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
PTPN4P29074 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC15.16■□□□□ 0.02
PTPN4P29074 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
PTPN4P29074 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
PTPN4P29074 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PTPN4P29074 AC027612.1-201ENST00000445234 2395 ntBASIC15.16■□□□□ 0.02
PTPN4P29074 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC15.15■□□□□ 0.02
PTPN4P29074 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.15■□□□□ 0.02
PTPN4P29074 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC15.15■□□□□ 0.02
PTPN4P29074 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
PTPN4P29074 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 AC099521.3-201ENST00000624251 2938 ntBASIC15.15■□□□□ 0.02
PTPN4P29074 SLC7A15P-201ENST00000424028 1363 ntBASIC15.15■□□□□ 0.02
PTPN4P29074 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
PTPN4P29074 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.15■□□□□ 0.02
PTPN4P29074 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN4P29074 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.15■□□□□ 0.02
PTPN4P29074 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC15.15■□□□□ 0.02
PTPN4P29074 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms