Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL5A1P20908 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC14.03□□□□□ -0.16
COL5A1P20908 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
COL5A1P20908 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL5A1P20908 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
COL5A1P20908 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC14.03□□□□□ -0.16
COL5A1P20908 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC14.03□□□□□ -0.16
COL5A1P20908 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL5A1P20908 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL5A1P20908 MRPL37P1-201ENST00000592451 1337 ntBASIC14.03□□□□□ -0.16
COL5A1P20908 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
COL5A1P20908 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.03□□□□□ -0.16
COL5A1P20908 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.03□□□□□ -0.16
COL5A1P20908 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.03□□□□□ -0.16
COL5A1P20908 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL5A1P20908 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL5A1P20908 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL5A1P20908 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
COL5A1P20908 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC14.03□□□□□ -0.16
COL5A1P20908 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL5A1P20908 GUSBP10-201ENST00000417412 665 ntBASIC14.03□□□□□ -0.16
COL5A1P20908 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC14.03□□□□□ -0.16
COL5A1P20908 BCAS2P2-201ENST00000425064 674 ntBASIC14.03□□□□□ -0.16
COL5A1P20908 IDS-203ENST00000428056 1213 ntTSL 2 BASIC14.03□□□□□ -0.16
COL5A1P20908 ERP29P1-201ENST00000442902 706 ntBASIC14.03□□□□□ -0.16
COL5A1P20908 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL5A1P20908 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC14.03□□□□□ -0.16
COL5A1P20908 RN7SL470P-201ENST00000583069 259 ntBASIC14.03□□□□□ -0.16
COL5A1P20908 MIR4472-1-201ENST00000584349 80 ntBASIC14.03□□□□□ -0.16
COL5A1P20908 AP000322.3-201ENST00000608665 388 ntBASIC14.03□□□□□ -0.16
COL5A1P20908 AC092135.3-201ENST00000624151 1846 ntBASIC14.03□□□□□ -0.16
COL5A1P20908 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL5A1P20908 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.03□□□□□ -0.16
COL5A1P20908 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL5A1P20908 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL5A1P20908 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL5A1P20908 TCAF2P1-201ENST00000291129 2421 ntBASIC14.02□□□□□ -0.16
COL5A1P20908 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.02□□□□□ -0.16
COL5A1P20908 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
COL5A1P20908 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL5A1P20908 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
COL5A1P20908 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL5A1P20908 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC14.02□□□□□ -0.16
COL5A1P20908 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC14.02□□□□□ -0.16
COL5A1P20908 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL5A1P20908 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL5A1P20908 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL5A1P20908 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL5A1P20908 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL5A1P20908 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
COL5A1P20908 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC14.02□□□□□ -0.16
COL5A1P20908 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL5A1P20908 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL5A1P20908 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL5A1P20908 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC14.02□□□□□ -0.16
COL5A1P20908 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC14.02□□□□□ -0.16
COL5A1P20908 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC14.02□□□□□ -0.16
COL5A1P20908 RNA5SP417-201ENST00000516459 108 ntBASIC14.02□□□□□ -0.16
COL5A1P20908 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL5A1P20908 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC14.02□□□□□ -0.16
COL5A1P20908 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC14.02□□□□□ -0.16
COL5A1P20908 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC14.02□□□□□ -0.16
COL5A1P20908 FO393412.1-201ENST00000619841 382 ntBASIC14.02□□□□□ -0.16
COL5A1P20908 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.02□□□□□ -0.16
COL5A1P20908 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC14.02□□□□□ -0.16
COL5A1P20908 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL5A1P20908 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL5A1P20908 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.02□□□□□ -0.17
COL5A1P20908 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL5A1P20908 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
COL5A1P20908 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
COL5A1P20908 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
COL5A1P20908 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.02□□□□□ -0.17
COL5A1P20908 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL5A1P20908 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL5A1P20908 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL5A1P20908 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL5A1P20908 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL5A1P20908 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL5A1P20908 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL5A1P20908 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL5A1P20908 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL5A1P20908 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
COL5A1P20908 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.01□□□□□ -0.17
COL5A1P20908 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC14.01□□□□□ -0.17
COL5A1P20908 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC14.01□□□□□ -0.17
COL5A1P20908 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.01□□□□□ -0.17
COL5A1P20908 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL5A1P20908 DUX4L50-201ENST00000455245 715 ntBASIC14.01□□□□□ -0.17
COL5A1P20908 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC14.01□□□□□ -0.17
COL5A1P20908 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC14.01□□□□□ -0.17
COL5A1P20908 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC14.01□□□□□ -0.17
COL5A1P20908 MT3-203ENST00000565838 421 ntTSL 3 BASIC14.01□□□□□ -0.17
COL5A1P20908 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL5A1P20908 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC14.01□□□□□ -0.17
COL5A1P20908 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC14.01□□□□□ -0.17
COL5A1P20908 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.01□□□□□ -0.17
COL5A1P20908 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
COL5A1P20908 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL5A1P20908 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms