Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC15.06■□□□□ 0
COL6A3P12111 NR1I2-206ENST00000638727 1194 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
COL6A3P12111 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL6A3P12111 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC15.06■□□□□ 0
COL6A3P12111 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL6A3P12111 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
COL6A3P12111 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL6A3P12111 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC15.06■□□□□ 0
COL6A3P12111 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
COL6A3P12111 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL6A3P12111 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC15.06■□□□□ 0
COL6A3P12111 S100A2-202ENST00000368708 998 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
COL6A3P12111 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL6A3P12111 RN7SL277P-201ENST00000481521 288 ntBASIC15.06■□□□□ 0
COL6A3P12111 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC15.06■□□□□ 0
COL6A3P12111 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC15.06■□□□□ 0
COL6A3P12111 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC15.06■□□□□ 0
COL6A3P12111 ABCD1P3-201ENST00000562927 605 ntBASIC15.06■□□□□ 0
COL6A3P12111 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC15.06■□□□□ 0
COL6A3P12111 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
COL6A3P12111 GABARAPL1-219ENST00000629504 379 ntTSL 4 BASIC15.06■□□□□ 0
COL6A3P12111 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC15.06■□□□□ 0
COL6A3P12111 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC15.05■□□□□ 0
COL6A3P12111 PNLIP-201ENST00000369221 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
COL6A3P12111 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.05■□□□□ 0
COL6A3P12111 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
COL6A3P12111 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC15.05■□□□□ 0
COL6A3P12111 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC15.05■□□□□ 0
COL6A3P12111 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC15.05■□□□□ 0
COL6A3P12111 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
COL6A3P12111 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
COL6A3P12111 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
COL6A3P12111 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
COL6A3P12111 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.05■□□□□ 0
COL6A3P12111 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.05■□□□□ 0
COL6A3P12111 AL645608.8-201ENST00000606034 2086 ntBASIC15.05■□□□□ 0
COL6A3P12111 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC15.05■□□□□ -0
COL6A3P12111 KRTAP10-12-201ENST00000400365 873 ntAPPRIS P2 BASIC15.05■□□□□ -0
COL6A3P12111 AC008021.1-201ENST00000474180 414 ntBASIC15.05■□□□□ -0
COL6A3P12111 METTL7AP1-201ENST00000547343 496 ntBASIC15.05■□□□□ -0
COL6A3P12111 ZFYVE1-206ENST00000555072 1225 ntTSL 1 (best) BASIC15.05■□□□□ -0
COL6A3P12111 AC009041.4-201ENST00000620075 638 ntBASIC15.05■□□□□ -0
COL6A3P12111 AC010335.3-201ENST00000623767 531 ntBASIC15.05■□□□□ -0
COL6A3P12111 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.05■□□□□ -0
COL6A3P12111 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
COL6A3P12111 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
COL6A3P12111 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.05■□□□□ -0
COL6A3P12111 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC15.05■□□□□ -0
COL6A3P12111 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.05■□□□□ -0
COL6A3P12111 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
COL6A3P12111 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC15.05■□□□□ -0
COL6A3P12111 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.05■□□□□ -0
COL6A3P12111 SPC25-201ENST00000282074 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
COL6A3P12111 ASS1P1-201ENST00000402854 1237 ntBASIC15.05■□□□□ -0
COL6A3P12111 UGT1A12P-201ENST00000447084 853 ntBASIC15.05■□□□□ -0
COL6A3P12111 ZNF268-208ENST00000539248 759 ntTSL 1 (best) BASIC15.05■□□□□ -0
COL6A3P12111 ZNF268-212ENST00000542711 861 ntTSL 1 (best) BASIC15.05■□□□□ -0
COL6A3P12111 AC026150.1-201ENST00000562992 701 ntTSL 5 BASIC15.05■□□□□ -0
COL6A3P12111 AL136982.5-201ENST00000605222 294 ntBASIC15.05■□□□□ -0
COL6A3P12111 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC15.05■□□□□ -0
COL6A3P12111 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC15.05■□□□□ -0
COL6A3P12111 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
COL6A3P12111 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
COL6A3P12111 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
COL6A3P12111 AC124067.4-201ENST00000519691 2379 ntBASIC15.05■□□□□ -0
COL6A3P12111 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
COL6A3P12111 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC15.05■□□□□ -0
COL6A3P12111 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
COL6A3P12111 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
COL6A3P12111 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL6A3P12111 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL6A3P12111 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
COL6A3P12111 PTPA-215ENST00000432124 567 ntTSL 4 BASIC15.04■□□□□ -0
COL6A3P12111 RPL38-202ENST00000439590 431 ntAPPRIS P2 TSL 2 BASIC15.04■□□□□ -0
COL6A3P12111 OR4C14P-201ENST00000440929 923 ntBASIC15.04■□□□□ -0
COL6A3P12111 AL136084.1-201ENST00000449172 318 ntBASIC15.04■□□□□ -0
COL6A3P12111 RN7SL838P-201ENST00000481676 295 ntBASIC15.04■□□□□ -0
COL6A3P12111 ZNF720-211ENST00000539915 837 ntTSL 3 BASIC15.04■□□□□ -0
COL6A3P12111 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC15.04■□□□□ -0
COL6A3P12111 TROAP-209ENST00000549275 348 ntAPPRIS ALT2 TSL 3 BASIC15.04■□□□□ -0
COL6A3P12111 TROAP-210ENST00000549534 839 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
COL6A3P12111 TYMSP2-201ENST00000589501 424 ntBASIC15.04■□□□□ -0
COL6A3P12111 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC15.04■□□□□ -0
COL6A3P12111 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.04■□□□□ -0
COL6A3P12111 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL6A3P12111 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL6A3P12111 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL6A3P12111 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
COL6A3P12111 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC15.04■□□□□ -0
COL6A3P12111 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.04■□□□□ -0
COL6A3P12111 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.04■□□□□ -0
COL6A3P12111 KDM5C-IT1-201ENST00000412242 755 ntTSL 5 BASIC15.04■□□□□ -0
COL6A3P12111 AL133351.2-201ENST00000437718 484 ntTSL 2 BASIC15.04■□□□□ -0
COL6A3P12111 RN7SL375P-201ENST00000492442 298 ntBASIC15.04■□□□□ -0
COL6A3P12111 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC15.04■□□□□ -0
COL6A3P12111 AC008555.6-201ENST00000605047 458 ntTSL 2 BASIC15.04■□□□□ -0
COL6A3P12111 AC127002.1-201ENST00000619123 455 ntBASIC15.04■□□□□ -0
COL6A3P12111 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC15.04■□□□□ -0
COL6A3P12111 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.04■□□□□ -0
COL6A3P12111 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms