Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXD4P09016 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXD4P09016 AC068587.6-202ENST00000641839 5619 ntBASIC13.69□□□□□ -0.22
HOXD4P09016 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
HOXD4P09016 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXD4P09016 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC13.69□□□□□ -0.22
HOXD4P09016 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC13.69□□□□□ -0.22
HOXD4P09016 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
HOXD4P09016 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
HOXD4P09016 FAM197Y7-201ENST00000432892 766 ntBASIC13.69□□□□□ -0.22
HOXD4P09016 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
HOXD4P09016 GOLGA2P4-201ENST00000441462 777 ntBASIC13.69□□□□□ -0.22
HOXD4P09016 KRT8P13-201ENST00000463294 1010 ntBASIC13.69□□□□□ -0.22
HOXD4P09016 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC13.69□□□□□ -0.22
HOXD4P09016 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXD4P09016 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC13.69□□□□□ -0.22
HOXD4P09016 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC13.69□□□□□ -0.22
HOXD4P09016 AC009542.2-202ENST00000619004 1067 ntBASIC13.69□□□□□ -0.22
HOXD4P09016 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 ETV2-208ENST00000621247 941 ntTSL 5 BASIC13.69□□□□□ -0.22
HOXD4P09016 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC13.69□□□□□ -0.22
HOXD4P09016 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXD4P09016 AC084364.1-201ENST00000551967 1556 ntBASIC13.69□□□□□ -0.22
HOXD4P09016 AC007787.1-201ENST00000588095 1583 ntBASIC13.69□□□□□ -0.22
HOXD4P09016 CICP8-201ENST00000455800 2813 ntBASIC13.69□□□□□ -0.22
HOXD4P09016 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXD4P09016 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 AL023775.1-201ENST00000454907 1746 ntBASIC13.69□□□□□ -0.22
HOXD4P09016 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
HOXD4P09016 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXD4P09016 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
HOXD4P09016 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD4P09016 COCH-203ENST00000460581 2688 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXD4P09016 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXD4P09016 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC13.68□□□□□ -0.22
HOXD4P09016 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC13.68□□□□□ -0.22
HOXD4P09016 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 HAL-202ENST00000538703 2637 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXD4P09016 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXD4P09016 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
HOXD4P09016 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
HOXD4P09016 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC13.68□□□□□ -0.22
HOXD4P09016 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXD4P09016 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
HOXD4P09016 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
HOXD4P09016 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC13.68□□□□□ -0.22
HOXD4P09016 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
HOXD4P09016 Z93015.1-201ENST00000451718 390 ntBASIC13.68□□□□□ -0.22
HOXD4P09016 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC13.68□□□□□ -0.22
HOXD4P09016 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 RIT1-205ENST00000539040 919 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXD4P09016 AC078819.1-201ENST00000547454 765 ntBASIC13.68□□□□□ -0.22
HOXD4P09016 AC012085.1-201ENST00000548270 765 ntBASIC13.68□□□□□ -0.22
HOXD4P09016 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXD4P09016 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
HOXD4P09016 AC118758.2-201ENST00000614242 2813 ntBASIC13.68□□□□□ -0.22
HOXD4P09016 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
HOXD4P09016 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXD4P09016 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms