Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 SYS1-203ENST00000414310 795 ntTSL 3 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 AQP6-203ENST00000551733 849 ntTSL 3 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 RARRES2P5-201ENST00000564013 466 ntBASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 AC005840.4-201ENST00000541242 2494 ntBASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 PTENP1-202ENST00000532280 3996 ntBASIC13.22□□□□□ -0.29
RHBDD3Q9Y3P4 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 SPDYE19P-201ENST00000338590 713 ntBASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 HNRNPA1P40-201ENST00000426371 1278 ntBASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 GNAQP1-201ENST00000444815 1067 ntBASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 TMPRSS11CP-201ENST00000453277 683 ntBASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 INGX-202ENST00000489074 768 ntBASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 RNA5SP421-201ENST00000516864 134 ntBASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 TPRX2P-201ENST00000535362 881 ntBASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 AC023310.3-201ENST00000557027 670 ntBASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 AC100756.1-201ENST00000562736 682 ntBASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 AC138749.3-201ENST00000567691 622 ntBASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 AC036164.1-201ENST00000570544 333 ntBASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 NAA60-208ENST00000570819 833 ntTSL 2 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 AC116165.1-201ENST00000611806 668 ntBASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.21□□□□□ -0.29
RHBDD3Q9Y3P4 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
RHBDD3Q9Y3P4 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
RHBDD3Q9Y3P4 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms