Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC13.37□□□□□ -0.27
MMP28Q9H239 ADH5P3-201ENST00000433842 1137 ntBASIC13.37□□□□□ -0.27
MMP28Q9H239 SPDYE11-202ENST00000450699 704 ntBASIC13.37□□□□□ -0.27
MMP28Q9H239 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC13.37□□□□□ -0.27
MMP28Q9H239 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC13.37□□□□□ -0.27
MMP28Q9H239 SPDYE9P-201ENST00000570642 692 ntBASIC13.37□□□□□ -0.27
MMP28Q9H239 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC13.37□□□□□ -0.27
MMP28Q9H239 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
MMP28Q9H239 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC13.37□□□□□ -0.27
MMP28Q9H239 AC026120.1-201ENST00000611536 926 ntBASIC13.37□□□□□ -0.27
MMP28Q9H239 SPDYE10P-202ENST00000612005 668 ntBASIC13.37□□□□□ -0.27
MMP28Q9H239 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
MMP28Q9H239 SPDYE8P-202ENST00000612377 668 ntBASIC13.37□□□□□ -0.27
MMP28Q9H239 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC13.37□□□□□ -0.27
MMP28Q9H239 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC13.37□□□□□ -0.27
MMP28Q9H239 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC13.37□□□□□ -0.27
MMP28Q9H239 TET3-201ENST00000305799 5174 ntTSL 5 BASIC13.37□□□□□ -0.27
MMP28Q9H239 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
MMP28Q9H239 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 ELL2P1-201ENST00000413990 1906 ntBASIC13.37□□□□□ -0.27
MMP28Q9H239 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC13.37□□□□□ -0.27
MMP28Q9H239 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
MMP28Q9H239 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC13.36□□□□□ -0.27
MMP28Q9H239 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
MMP28Q9H239 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC13.36□□□□□ -0.27
MMP28Q9H239 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
MMP28Q9H239 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC13.36□□□□□ -0.27
MMP28Q9H239 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 RAC2-202ENST00000401529 569 ntTSL 4 BASIC13.36□□□□□ -0.27
MMP28Q9H239 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC13.36□□□□□ -0.27
MMP28Q9H239 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC13.36□□□□□ -0.27
MMP28Q9H239 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
MMP28Q9H239 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC13.36□□□□□ -0.27
MMP28Q9H239 GATB-205ENST00000508611 605 ntTSL 2 BASIC13.36□□□□□ -0.27
MMP28Q9H239 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC13.36□□□□□ -0.27
MMP28Q9H239 LINC02084-201ENST00000606069 1096 ntBASIC13.36□□□□□ -0.27
MMP28Q9H239 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC13.36□□□□□ -0.27
MMP28Q9H239 AC004241.5-201ENST00000623870 2448 ntBASIC13.36□□□□□ -0.27
MMP28Q9H239 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
MMP28Q9H239 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC13.36□□□□□ -0.27
MMP28Q9H239 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC13.36□□□□□ -0.27
MMP28Q9H239 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
MMP28Q9H239 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC13.36□□□□□ -0.27
MMP28Q9H239 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
MMP28Q9H239 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC13.36□□□□□ -0.27
MMP28Q9H239 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC13.36□□□□□ -0.27
MMP28Q9H239 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
MMP28Q9H239 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
MMP28Q9H239 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MMP28Q9H239 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC13.35□□□□□ -0.27
MMP28Q9H239 RET-205ENST00000615310 4337 ntTSL 5 BASIC13.35□□□□□ -0.27
MMP28Q9H239 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms