Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM56Q9BRZ2 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC15.41■□□□□ 0.06
TRIM56Q9BRZ2 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM56Q9BRZ2 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.41■□□□□ 0.06
TRIM56Q9BRZ2 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM56Q9BRZ2 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM56Q9BRZ2 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM56Q9BRZ2 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.41■□□□□ 0.06
TRIM56Q9BRZ2 AC113367.3-201ENST00000508316 1912 ntBASIC15.41■□□□□ 0.06
TRIM56Q9BRZ2 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM56Q9BRZ2 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM56Q9BRZ2 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC15.41■□□□□ 0.06
TRIM56Q9BRZ2 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 AC005840.4-201ENST00000541242 2494 ntBASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 SRC-202ENST00000373558 4304 ntTSL 5 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 AC023310.3-201ENST00000557027 670 ntBASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 DUT-210ENST00000559935 569 ntTSL 3 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 AC100756.1-201ENST00000562736 682 ntBASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 AC138749.3-201ENST00000567691 622 ntBASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 PRR29-204ENST00000577953 565 ntTSL 4 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 AC116165.1-201ENST00000611806 668 ntBASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 AC022144.1-201ENST00000602255 1580 ntBASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 AC087386.2-201ENST00000623212 4637 ntBASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
TRIM56Q9BRZ2 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.06
TRIM56Q9BRZ2 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC15.39■□□□□ 0.06
TRIM56Q9BRZ2 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 AL137783.1-201ENST00000623494 1896 ntBASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 AC027601.5-201ENST00000624065 2482 ntBASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM56Q9BRZ2 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms