Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
NUP88Q99567 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC17.59■□□□□ 0.41
NUP88Q99567 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
NUP88Q99567 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
NUP88Q99567 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
NUP88Q99567 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC17.58■□□□□ 0.41
NUP88Q99567 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
NUP88Q99567 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
NUP88Q99567 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC17.58■□□□□ 0.41
NUP88Q99567 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC17.58■□□□□ 0.41
NUP88Q99567 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC17.58■□□□□ 0.41
NUP88Q99567 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
NUP88Q99567 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC17.58■□□□□ 0.41
NUP88Q99567 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
NUP88Q99567 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
NUP88Q99567 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC17.58■□□□□ 0.4
NUP88Q99567 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP88Q99567 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
NUP88Q99567 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC17.58■□□□□ 0.4
NUP88Q99567 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
NUP88Q99567 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
NUP88Q99567 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
NUP88Q99567 NME6-203ENST00000415644 849 ntTSL 2 BASIC17.58■□□□□ 0.4
NUP88Q99567 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC17.58■□□□□ 0.4
NUP88Q99567 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC17.58■□□□□ 0.4
NUP88Q99567 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC17.58■□□□□ 0.4
NUP88Q99567 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC17.58■□□□□ 0.4
NUP88Q99567 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC17.58■□□□□ 0.4
NUP88Q99567 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC17.58■□□□□ 0.4
NUP88Q99567 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
NUP88Q99567 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC17.58■□□□□ 0.4
NUP88Q99567 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP88Q99567 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
NUP88Q99567 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP88Q99567 INE2-201ENST00000630399 1874 ntBASIC17.58■□□□□ 0.4
NUP88Q99567 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
NUP88Q99567 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP88Q99567 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC17.58■□□□□ 0.4
NUP88Q99567 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP88Q99567 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC17.58■□□□□ 0.4
NUP88Q99567 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP88Q99567 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP88Q99567 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC17.58■□□□□ 0.4
NUP88Q99567 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP88Q99567 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP88Q99567 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
NUP88Q99567 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
NUP88Q99567 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NUP88Q99567 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP88Q99567 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC17.57■□□□□ 0.4
NUP88Q99567 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC17.57■□□□□ 0.4
NUP88Q99567 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
NUP88Q99567 AP000845.1-201ENST00000581677 2131 ntBASIC17.57■□□□□ 0.4
NUP88Q99567 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC17.57■□□□□ 0.4
NUP88Q99567 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC17.57■□□□□ 0.4
NUP88Q99567 AC023024.2-201ENST00000623561 1993 ntBASIC17.57■□□□□ 0.4
NUP88Q99567 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP88Q99567 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP88Q99567 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC17.57■□□□□ 0.4
NUP88Q99567 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP88Q99567 GRN-222ENST00000639447 1314 ntTSL 2 BASIC17.57■□□□□ 0.4
NUP88Q99567 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP88Q99567 AL365209.1-201ENST00000624418 6473 ntBASIC17.57■□□□□ 0.4
NUP88Q99567 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP88Q99567 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP88Q99567 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP88Q99567 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC17.57■□□□□ 0.4
NUP88Q99567 KRTAP10-13P-201ENST00000412914 571 ntBASIC17.57■□□□□ 0.4
NUP88Q99567 BCYRN1-201ENST00000418539 200 ntBASIC17.57■□□□□ 0.4
NUP88Q99567 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC17.57■□□□□ 0.4
NUP88Q99567 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC17.57■□□□□ 0.4
NUP88Q99567 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC17.57■□□□□ 0.4
NUP88Q99567 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC17.57■□□□□ 0.4
NUP88Q99567 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC17.57■□□□□ 0.4
NUP88Q99567 HSPB1P2-201ENST00000448722 546 ntBASIC17.57■□□□□ 0.4
NUP88Q99567 HIST2H2BB-201ENST00000449108 381 ntBASIC17.57■□□□□ 0.4
NUP88Q99567 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC17.57■□□□□ 0.4
NUP88Q99567 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC17.57■□□□□ 0.4
NUP88Q99567 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC17.57■□□□□ 0.4
NUP88Q99567 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC17.57■□□□□ 0.4
NUP88Q99567 MIR4683-201ENST00000579659 81 ntBASIC17.57■□□□□ 0.4
NUP88Q99567 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NUP88Q99567 AL606495.2-201ENST00000605867 535 ntBASIC17.57■□□□□ 0.4
NUP88Q99567 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC17.57■□□□□ 0.4
NUP88Q99567 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.57■□□□□ 0.4
NUP88Q99567 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC17.57■□□□□ 0.4
NUP88Q99567 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NUP88Q99567 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NUP88Q99567 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
NUP88Q99567 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NUP88Q99567 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NUP88Q99567 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC17.57■□□□□ 0.4
NUP88Q99567 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC17.57■□□□□ 0.4
NUP88Q99567 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC17.57■□□□□ 0.4
NUP88Q99567 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NUP88Q99567 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
NUP88Q99567 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
NUP88Q99567 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
NUP88Q99567 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
NUP88Q99567 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms