Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 RNVU1-8-201ENST00000364272 125 ntBASIC14.43□□□□□ -0.1
VPS13AQ96RL7 AHCYP3-201ENST00000420053 1279 ntBASIC14.43□□□□□ -0.1
VPS13AQ96RL7 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 ALG1L3P-201ENST00000503331 765 ntBASIC14.43□□□□□ -0.1
VPS13AQ96RL7 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 MT2A-202ENST00000561491 581 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS13AQ96RL7 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 AL160191.2-201ENST00000603975 601 ntBASIC14.42□□□□□ -0.1
VPS13AQ96RL7 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.42□□□□□ -0.1
VPS13AQ96RL7 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 RGS5-216ENST00000449680 788 ntTSL 3 BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 EEF1DP5-201ENST00000431410 772 ntBASIC14.42□□□□□ -0.1
VPS13AQ96RL7 TPT1P6-201ENST00000458298 514 ntBASIC14.42□□□□□ -0.1
VPS13AQ96RL7 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 AC006116.2-201ENST00000589958 988 ntBASIC14.42□□□□□ -0.1
VPS13AQ96RL7 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS13AQ96RL7 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 HIST1H2APS2-201ENST00000454426 370 ntBASIC14.41□□□□□ -0.1
VPS13AQ96RL7 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 AC003686.1-201ENST00000550956 1034 ntBASIC14.41□□□□□ -0.1
VPS13AQ96RL7 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 FBXO36P1-201ENST00000579006 471 ntBASIC14.41□□□□□ -0.1
VPS13AQ96RL7 BX088702.1-201ENST00000610784 235 ntBASIC14.41□□□□□ -0.1
VPS13AQ96RL7 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 AC092580.1-201ENST00000433998 658 ntBASIC14.41□□□□□ -0.1
VPS13AQ96RL7 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms