Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CCDC54Q8NEL0 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 MEP1AP4-201ENST00000423244 1087 ntBASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 AL353779.1-201ENST00000434793 351 ntBASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 RARRES2P5-201ENST00000564013 466 ntBASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 AC093813.1-201ENST00000605066 256 ntBASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 AL391069.4-201ENST00000609583 481 ntBASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 SLC4A5-205ENST00000394019 6348 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
CCDC54Q8NEL0 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 CACNA1G-232ENST00000515411 6960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 AC026410.3-201ENST00000514280 936 ntBASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms