Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC116Q8IYX3 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC116Q8IYX3 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC116Q8IYX3 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CCDC116Q8IYX3 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC116Q8IYX3 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.24□□□□□ -0.13
CCDC116Q8IYX3 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.24□□□□□ -0.13
CCDC116Q8IYX3 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC116Q8IYX3 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC116Q8IYX3 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC116Q8IYX3 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC116Q8IYX3 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC116Q8IYX3 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CCDC116Q8IYX3 LRTM1-201ENST00000273286 1423 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC116Q8IYX3 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.24□□□□□ -0.13
CCDC116Q8IYX3 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 ENKUR-202ENST00000376363 1318 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 AC139749.1-202ENST00000617529 3139 ntBASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 AC092473.1-201ENST00000441098 221 ntBASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 AC093433.1-201ENST00000458048 571 ntBASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 AC006518.1-201ENST00000541449 943 ntBASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 DUX4L47-201ENST00000566374 394 ntBASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 LRRC59-203ENST00000576448 1531 ntBASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC116Q8IYX3 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 AC007292.2-201ENST00000593524 1812 ntBASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 AC055811.4-201ENST00000624039 1754 ntBASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 AC107308.1-201ENST00000615897 301 ntBASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC116Q8IYX3 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms