Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 BAIAP2-AS1-202ENST00000577066 4465 ntTSL 2 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 TOLLIP-207ENST00000527886 3666 ntTSL 2 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 BHMT2-201ENST00000255192 2050 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 MYO18B-202ENST00000407587 8090 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 MYH3-205ENST00000583535 6037 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 AL353807.1-201ENST00000427475 662 ntBASIC9.29□□□□□ -0.92
LINC00643Q86TS7 TSPY17P-201ENST00000450329 467 ntBASIC9.29□□□□□ -0.92
LINC00643Q86TS7 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 BET1L-207ENST00000529614 560 ntTSL 5 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 MAZ-216ENST00000616501 991 ntTSL 5 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 AL157888.1-201ENST00000631930 593 ntBASIC9.29□□□□□ -0.92
LINC00643Q86TS7 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 OSBP2-203ENST00000403222 3728 ntTSL 5 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 AL645937.6-201ENST00000641122 3727 ntBASIC9.29□□□□□ -0.92
LINC00643Q86TS7 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 OR1I1-202ENST00000641398 5984 ntAPPRIS P1 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 IP6K1-202ENST00000395238 4117 ntTSL 3 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 INF2-202ENST00000330634 7578 ntAPPRIS ALT2 TSL 5 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 SLC5A11-201ENST00000347898 2745 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 RSPO2-202ENST00000517781 2748 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 ZCCHC9-201ENST00000254037 4606 ntAPPRIS P1 TSL 2 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 BAZ2A-201ENST00000379441 8831 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 GRIA4-210ENST00000527669 2647 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 L3MBTL1-203ENST00000373135 3218 ntAPPRIS P3 TSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 AC008806.1-201ENST00000624962 2443 ntBASIC9.29□□□□□ -0.92
LINC00643Q86TS7 RBM15-204ENST00000617047 3284 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
LINC00643Q86TS7 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 AC026271.4-201ENST00000578214 1833 ntBASIC9.28□□□□□ -0.92
LINC00643Q86TS7 PLOD3-201ENST00000223127 2920 ntAPPRIS P2 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 SYNPO-202ENST00000394243 7063 ntAPPRIS ALT2 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 AC115284.2-201ENST00000624646 2054 ntBASIC9.28□□□□□ -0.92
LINC00643Q86TS7 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 CHTF18-201ENST00000262315 3090 ntAPPRIS P2 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 FAM230B-208ENST00000451257 3566 ntTSL 5 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 NUP62-208ENST00000596217 3590 ntAPPRIS P1 TSL 2 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 AP2A2-202ENST00000448903 4575 ntAPPRIS P3 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 PRKG2-201ENST00000264399 4822 ntAPPRIS P1 TSL 5 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 ESRRB-201ENST00000380887 2745 ntTSL 5 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 TNRC6C-211ENST00000636222 7093 ntAPPRIS ALT2 TSL 5 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 FAM95B1-201ENST00000455995 4236 ntTSL 2 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 ITGAL-201ENST00000356798 5213 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 AL583810.2-201ENST00000556430 3254 ntBASIC9.28□□□□□ -0.92
LINC00643Q86TS7 TJAP1-202ENST00000372444 2778 ntAPPRIS P1 TSL 5 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 TJAP1-203ENST00000372445 2751 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 COG4-202ENST00000393612 2756 ntAPPRIS ALT2 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 CXCL5-201ENST00000296027 2538 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 DAO-201ENST00000228476 1756 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 SIGLEC30P-201ENST00000455569 941 ntBASIC9.28□□□□□ -0.92
LINC00643Q86TS7 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 SUDS3P1-201ENST00000505831 966 ntBASIC9.28□□□□□ -0.92
LINC00643Q86TS7 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 AL353719.1-201ENST00000566847 864 ntBASIC9.28□□□□□ -0.92
LINC00643Q86TS7 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 AC105036.2-201ENST00000569468 176 ntBASIC9.28□□□□□ -0.92
LINC00643Q86TS7 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
LINC00643Q86TS7 AC009955.4-201ENST00000597192 544 ntBASIC9.28□□□□□ -0.92
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms