Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 RN7SL470P-201ENST00000583069 259 ntBASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 MME-218ENST00000625667 363 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 AC046158.3-201ENST00000624947 2558 ntBASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 HLA-DQB1-202ENST00000399079 1501 ntBASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 AC022532.1-201ENST00000624563 1728 ntBASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 FAM90A21P-201ENST00000510875 1396 ntBASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 FAM90A15P-201ENST00000514465 1395 ntBASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 FAM90A6P-201ENST00000515148 1394 ntBASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 FAM90A16P-201ENST00000526662 1395 ntBASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 FAM90A9P-201ENST00000527940 1395 ntBASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 FAM90A5P-201ENST00000528738 1395 ntBASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 FAM90A14P-201ENST00000530386 1395 ntBASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 FAM90A13P-201ENST00000534703 1395 ntBASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 GCOM2-201ENST00000509133 1104 ntBASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 HMGB1P24-201ENST00000611897 328 ntBASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 AC002472.4-201ENST00000641915 272 ntBASIC17.95■□□□□ 0.46
CCDC88AQ3V6T2 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 ZBED1P1-201ENST00000502364 1930 ntBASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CCDC88AQ3V6T2 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 PGR-210ENST00000619228 3038 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 GCSHP3-201ENST00000431120 391 ntBASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 DDX39AP1-201ENST00000445147 1181 ntBASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 AGPAT5P1-201ENST00000455855 1019 ntBASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 SCARNA12-201ENST00000459155 270 ntBASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 RPS23-204ENST00000507980 836 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 MIR2392-201ENST00000584881 84 ntBASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 AC007326.1-201ENST00000604539 458 ntBASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 NAMA-206ENST00000605377 509 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 SALL4P5-201ENST00000419001 1760 ntBASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC88AQ3V6T2 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms