Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.19□□□□□ -0.3
TFF3Q07654 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
TFF3Q07654 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC13.19□□□□□ -0.3
TFF3Q07654 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC13.19□□□□□ -0.3
TFF3Q07654 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC13.19□□□□□ -0.3
TFF3Q07654 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
TFF3Q07654 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC13.19□□□□□ -0.3
TFF3Q07654 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 SLC16A6P1-201ENST00000413214 1059 ntBASIC13.19□□□□□ -0.3
TFF3Q07654 PARVG-202ENST00000415224 999 ntTSL 2 BASIC13.19□□□□□ -0.3
TFF3Q07654 GHSR-202ENST00000427970 912 ntBASIC13.19□□□□□ -0.3
TFF3Q07654 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC13.19□□□□□ -0.3
TFF3Q07654 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC13.19□□□□□ -0.3
TFF3Q07654 EEF1DP6-201ENST00000449232 372 ntBASIC13.19□□□□□ -0.3
TFF3Q07654 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC13.19□□□□□ -0.3
TFF3Q07654 AC104073.2-201ENST00000453737 312 ntBASIC13.19□□□□□ -0.3
TFF3Q07654 AC012618.1-201ENST00000461223 412 ntBASIC13.19□□□□□ -0.3
TFF3Q07654 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC13.19□□□□□ -0.3
TFF3Q07654 AC026434.2-201ENST00000506094 1078 ntBASIC13.19□□□□□ -0.3
TFF3Q07654 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC13.19□□□□□ -0.3
TFF3Q07654 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC13.19□□□□□ -0.3
TFF3Q07654 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC13.19□□□□□ -0.3
TFF3Q07654 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC13.19□□□□□ -0.3
TFF3Q07654 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC13.19□□□□□ -0.3
TFF3Q07654 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 AC009955.4-201ENST00000597192 544 ntBASIC13.19□□□□□ -0.3
TFF3Q07654 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
TFF3Q07654 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC13.19□□□□□ -0.3
TFF3Q07654 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.19□□□□□ -0.3
TFF3Q07654 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
TFF3Q07654 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
TFF3Q07654 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
TFF3Q07654 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
TFF3Q07654 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
TFF3Q07654 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
TFF3Q07654 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
TFF3Q07654 FKBP4P6-201ENST00000457486 1332 ntBASIC13.18□□□□□ -0.3
TFF3Q07654 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC13.18□□□□□ -0.3
TFF3Q07654 AC092978.1-202ENST00000637590 1327 ntBASIC13.18□□□□□ -0.3
TFF3Q07654 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
TFF3Q07654 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
TFF3Q07654 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
TFF3Q07654 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
TFF3Q07654 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
TFF3Q07654 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
TFF3Q07654 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
TFF3Q07654 REXO1L5P-201ENST00000622260 2098 ntBASIC13.18□□□□□ -0.3
TFF3Q07654 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
TFF3Q07654 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
TFF3Q07654 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC13.18□□□□□ -0.3
TFF3Q07654 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
TFF3Q07654 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC13.18□□□□□ -0.3
TFF3Q07654 IGF1-203ENST00000392904 761 ntTSL 5 BASIC13.18□□□□□ -0.3
TFF3Q07654 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
TFF3Q07654 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.18□□□□□ -0.3
TFF3Q07654 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.18□□□□□ -0.3
TFF3Q07654 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.18□□□□□ -0.3
TFF3Q07654 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC13.18□□□□□ -0.3
TFF3Q07654 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC13.18□□□□□ -0.3
TFF3Q07654 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
TFF3Q07654 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC13.18□□□□□ -0.3
TFF3Q07654 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC13.18□□□□□ -0.3
TFF3Q07654 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC13.18□□□□□ -0.3
TFF3Q07654 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC13.18□□□□□ -0.3
TFF3Q07654 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC13.18□□□□□ -0.3
TFF3Q07654 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
TFF3Q07654 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
TFF3Q07654 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC13.18□□□□□ -0.3
TFF3Q07654 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms