Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 DDX39AP1-201ENST00000445147 1181 ntBASIC15.64■□□□□ 0.09
COL4A4P53420 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC15.64■□□□□ 0.09
COL4A4P53420 GCOM2-201ENST00000509133 1104 ntBASIC15.64■□□□□ 0.09
COL4A4P53420 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC15.64■□□□□ 0.09
COL4A4P53420 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL4A4P53420 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC15.64■□□□□ 0.09
COL4A4P53420 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC15.64■□□□□ 0.09
COL4A4P53420 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC15.64■□□□□ 0.09
COL4A4P53420 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL4A4P53420 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL4A4P53420 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.64■□□□□ 0.09
COL4A4P53420 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL4A4P53420 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL4A4P53420 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC15.64■□□□□ 0.09
COL4A4P53420 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
COL4A4P53420 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.64■□□□□ 0.09
COL4A4P53420 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
COL4A4P53420 MARK2P16-201ENST00000605714 1723 ntBASIC15.64■□□□□ 0.09
COL4A4P53420 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL4A4P53420 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL4A4P53420 AC013726.1-201ENST00000563747 2285 ntBASIC15.64■□□□□ 0.09
COL4A4P53420 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC15.63■□□□□ 0.09
COL4A4P53420 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC15.63■□□□□ 0.09
COL4A4P53420 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC15.63■□□□□ 0.09
COL4A4P53420 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL4A4P53420 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC15.63■□□□□ 0.09
COL4A4P53420 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC15.63■□□□□ 0.09
COL4A4P53420 AC138701.2-201ENST00000553634 226 ntBASIC15.63■□□□□ 0.09
COL4A4P53420 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL4A4P53420 SIGLEC18P-201ENST00000602271 909 ntBASIC15.63■□□□□ 0.09
COL4A4P53420 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC15.63■□□□□ 0.09
COL4A4P53420 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.63■□□□□ 0.09
COL4A4P53420 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC15.63■□□□□ 0.09
COL4A4P53420 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC15.63■□□□□ 0.09
COL4A4P53420 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL4A4P53420 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL4A4P53420 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
COL4A4P53420 LINC01101-201ENST00000622953 1884 ntBASIC15.63■□□□□ 0.09
COL4A4P53420 TNRC18P2-201ENST00000417666 2714 ntBASIC15.63■□□□□ 0.09
COL4A4P53420 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL4A4P53420 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC15.63■□□□□ 0.09
COL4A4P53420 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL4A4P53420 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.63■□□□□ 0.09
COL4A4P53420 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL4A4P53420 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL4A4P53420 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.63■□□□□ 0.09
COL4A4P53420 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC15.63■□□□□ 0.09
COL4A4P53420 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
COL4A4P53420 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC15.63■□□□□ 0.09
COL4A4P53420 BANF1P3-201ENST00000412556 261 ntBASIC15.63■□□□□ 0.09
COL4A4P53420 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC15.63■□□□□ 0.09
COL4A4P53420 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC15.63■□□□□ 0.09
COL4A4P53420 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC15.63■□□□□ 0.09
COL4A4P53420 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC15.63■□□□□ 0.09
COL4A4P53420 AL354861.1-201ENST00000445213 355 ntBASIC15.63■□□□□ 0.09
COL4A4P53420 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC15.63■□□□□ 0.09
COL4A4P53420 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC15.63■□□□□ 0.09
COL4A4P53420 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC15.63■□□□□ 0.09
COL4A4P53420 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL4A4P53420 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC15.63■□□□□ 0.09
COL4A4P53420 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
COL4A4P53420 AC148477.9-201ENST00000623974 539 ntBASIC15.63■□□□□ 0.09
COL4A4P53420 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.63■□□□□ 0.09
COL4A4P53420 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL4A4P53420 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL4A4P53420 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
COL4A4P53420 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL4A4P53420 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL4A4P53420 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.63■□□□□ 0.09
COL4A4P53420 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL4A4P53420 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC15.62■□□□□ 0.09
COL4A4P53420 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL4A4P53420 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
COL4A4P53420 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL4A4P53420 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL4A4P53420 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL4A4P53420 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC15.62■□□□□ 0.09
COL4A4P53420 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.62■□□□□ 0.09
COL4A4P53420 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
COL4A4P53420 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL4A4P53420 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
COL4A4P53420 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
COL4A4P53420 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL4A4P53420 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL4A4P53420 KRT17P4-201ENST00000429445 819 ntBASIC15.62■□□□□ 0.09
COL4A4P53420 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC15.62■□□□□ 0.09
COL4A4P53420 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
COL4A4P53420 AC114947.1-202ENST00000514136 344 ntBASIC15.62■□□□□ 0.09
COL4A4P53420 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC15.62■□□□□ 0.09
COL4A4P53420 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC15.62■□□□□ 0.09
COL4A4P53420 VPS18-202ENST00000558474 873 ntTSL 3 BASIC15.62■□□□□ 0.09
COL4A4P53420 MT3-203ENST00000565838 421 ntTSL 3 BASIC15.62■□□□□ 0.09
COL4A4P53420 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC15.62■□□□□ 0.09
COL4A4P53420 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC15.62■□□□□ 0.09
COL4A4P53420 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL4A4P53420 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL4A4P53420 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL4A4P53420 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC15.62■□□□□ 0.09
COL4A4P53420 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.62■□□□□ 0.09
COL4A4P53420 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms