Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CTCFP49711 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.28■□□□□ 0.36
CTCFP49711 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC17.28■□□□□ 0.36
CTCFP49711 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
CTCFP49711 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.28■□□□□ 0.36
CTCFP49711 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 AC132872.4-202ENST00000622924 2756 ntBASIC17.28■□□□□ 0.36
CTCFP49711 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CTCFP49711 WASH7P-201ENST00000488147 1351 ntBASIC17.28■□□□□ 0.36
CTCFP49711 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC17.28■□□□□ 0.36
CTCFP49711 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CTCFP49711 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.27■□□□□ 0.36
CTCFP49711 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.27■□□□□ 0.36
CTCFP49711 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.27■□□□□ 0.36
CTCFP49711 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CTCFP49711 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.27■□□□□ 0.36
CTCFP49711 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC17.27■□□□□ 0.36
CTCFP49711 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CTCFP49711 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
CTCFP49711 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CTCFP49711 SURF4-203ENST00000371991 715 ntTSL 3 BASIC17.27■□□□□ 0.36
CTCFP49711 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CTCFP49711 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
CTCFP49711 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CTCFP49711 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CTCFP49711 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CTCFP49711 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
CTCFP49711 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC17.27■□□□□ 0.36
CTCFP49711 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC17.27■□□□□ 0.36
CTCFP49711 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC17.27■□□□□ 0.36
CTCFP49711 DPY19L2P5-201ENST00000456300 331 ntBASIC17.27■□□□□ 0.36
CTCFP49711 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC17.27■□□□□ 0.36
CTCFP49711 SRP14-204ENST00000558720 780 ntTSL 2 BASIC17.27■□□□□ 0.36
CTCFP49711 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
CTCFP49711 AP005264.6-204ENST00000588436 719 ntBASIC17.27■□□□□ 0.36
CTCFP49711 NAV1-210ENST00000593583 726 ntBASIC17.27■□□□□ 0.36
CTCFP49711 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC17.27■□□□□ 0.36
CTCFP49711 AP000322.3-201ENST00000608665 388 ntBASIC17.27■□□□□ 0.36
CTCFP49711 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CTCFP49711 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CTCFP49711 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CTCFP49711 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
CTCFP49711 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC17.27■□□□□ 0.36
CTCFP49711 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC17.27■□□□□ 0.36
CTCFP49711 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CTCFP49711 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
CTCFP49711 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
CTCFP49711 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CTCFP49711 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.27■□□□□ 0.35
CTCFP49711 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CTCFP49711 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC17.26■□□□□ 0.35
CTCFP49711 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.26■□□□□ 0.35
CTCFP49711 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC17.26■□□□□ 0.35
CTCFP49711 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.26■□□□□ 0.35
CTCFP49711 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
CTCFP49711 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CTCFP49711 AC015909.3-201ENST00000572855 1794 ntBASIC17.26■□□□□ 0.35
CTCFP49711 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.26■□□□□ 0.35
CTCFP49711 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC17.26■□□□□ 0.35
CTCFP49711 NME4-203ENST00000397722 1232 ntTSL 2 BASIC17.26■□□□□ 0.35
CTCFP49711 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC17.26■□□□□ 0.35
CTCFP49711 KLF2P1-201ENST00000447438 1042 ntBASIC17.26■□□□□ 0.35
CTCFP49711 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC17.26■□□□□ 0.35
CTCFP49711 RBM4-207ENST00000506523 654 ntTSL 3 BASIC17.26■□□□□ 0.35
CTCFP49711 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC17.26■□□□□ 0.35
CTCFP49711 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC17.26■□□□□ 0.35
CTCFP49711 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC17.26■□□□□ 0.35
CTCFP49711 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
CTCFP49711 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CTCFP49711 AC009884.2-201ENST00000603110 324 ntBASIC17.26■□□□□ 0.35
CTCFP49711 AC011462.4-201ENST00000616866 449 ntBASIC17.26■□□□□ 0.35
CTCFP49711 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.26■□□□□ 0.35
CTCFP49711 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CTCFP49711 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms