Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC12.8□□□□□ -0.36
USF1P22415 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC12.8□□□□□ -0.36
USF1P22415 AC004898.1-201ENST00000451057 766 ntBASIC12.8□□□□□ -0.36
USF1P22415 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC12.8□□□□□ -0.36
USF1P22415 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC12.8□□□□□ -0.36
USF1P22415 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC12.8□□□□□ -0.36
USF1P22415 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC12.8□□□□□ -0.36
USF1P22415 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
USF1P22415 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
USF1P22415 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC12.8□□□□□ -0.36
USF1P22415 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC12.8□□□□□ -0.36
USF1P22415 ECM1P1-201ENST00000604092 1279 ntBASIC12.8□□□□□ -0.36
USF1P22415 AC025181.2-201ENST00000606994 802 ntBASIC12.8□□□□□ -0.36
USF1P22415 AC136621.1-201ENST00000624017 2304 ntBASIC12.8□□□□□ -0.36
USF1P22415 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
USF1P22415 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC12.8□□□□□ -0.36
USF1P22415 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC12.8□□□□□ -0.36
USF1P22415 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
USF1P22415 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
USF1P22415 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC12.8□□□□□ -0.36
USF1P22415 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
USF1P22415 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
USF1P22415 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
USF1P22415 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
USF1P22415 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
USF1P22415 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC12.8□□□□□ -0.36
USF1P22415 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC12.8□□□□□ -0.36
USF1P22415 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
USF1P22415 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC12.8□□□□□ -0.36
USF1P22415 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
USF1P22415 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
USF1P22415 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
USF1P22415 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
USF1P22415 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC12.79□□□□□ -0.36
USF1P22415 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC12.79□□□□□ -0.36
USF1P22415 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
USF1P22415 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 AC105250.1-201ENST00000509378 2057 ntBASIC12.79□□□□□ -0.36
USF1P22415 AC023157.3-201ENST00000619086 2088 ntBASIC12.79□□□□□ -0.36
USF1P22415 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
USF1P22415 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC12.79□□□□□ -0.36
USF1P22415 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC12.79□□□□□ -0.36
USF1P22415 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
USF1P22415 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC12.79□□□□□ -0.36
USF1P22415 AC013268.4-201ENST00000637413 2228 ntBASIC12.79□□□□□ -0.36
USF1P22415 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC12.79□□□□□ -0.36
USF1P22415 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
USF1P22415 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC12.79□□□□□ -0.36
USF1P22415 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC12.79□□□□□ -0.36
USF1P22415 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
USF1P22415 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC12.79□□□□□ -0.36
USF1P22415 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
USF1P22415 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
USF1P22415 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC12.79□□□□□ -0.36
USF1P22415 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
USF1P22415 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC12.79□□□□□ -0.36
USF1P22415 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC12.79□□□□□ -0.36
USF1P22415 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
USF1P22415 AP006547.1-201ENST00000563435 692 ntBASIC12.79□□□□□ -0.36
USF1P22415 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC12.79□□□□□ -0.36
USF1P22415 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC12.79□□□□□ -0.36
USF1P22415 AC005695.3-201ENST00000614522 232 ntBASIC12.79□□□□□ -0.36
USF1P22415 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC12.79□□□□□ -0.36
USF1P22415 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC12.79□□□□□ -0.36
USF1P22415 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC12.79□□□□□ -0.36
USF1P22415 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC12.79□□□□□ -0.36
USF1P22415 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC12.79□□□□□ -0.36
USF1P22415 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
USF1P22415 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC12.78□□□□□ -0.36
USF1P22415 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC12.78□□□□□ -0.36
USF1P22415 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC12.78□□□□□ -0.36
USF1P22415 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC12.78□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms