Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 INGX-202ENST00000489074 768 ntBASIC14.32□□□□□ -0.12
SDC1P18827 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.32□□□□□ -0.12
SDC1P18827 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC14.32□□□□□ -0.12
SDC1P18827 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.32□□□□□ -0.12
SDC1P18827 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.32□□□□□ -0.12
SDC1P18827 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
SDC1P18827 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.32□□□□□ -0.12
SDC1P18827 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.32□□□□□ -0.12
SDC1P18827 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.32□□□□□ -0.12
SDC1P18827 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC14.32□□□□□ -0.12
SDC1P18827 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.32□□□□□ -0.12
SDC1P18827 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.32□□□□□ -0.12
SDC1P18827 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
SDC1P18827 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
SDC1P18827 MIR600HG-201ENST00000449175 5984 ntBASIC14.32□□□□□ -0.12
SDC1P18827 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
SDC1P18827 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SDC1P18827 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
SDC1P18827 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.31□□□□□ -0.12
SDC1P18827 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDC1P18827 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDC1P18827 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.31□□□□□ -0.12
SDC1P18827 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.31□□□□□ -0.12
SDC1P18827 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
SDC1P18827 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
SDC1P18827 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.31□□□□□ -0.12
SDC1P18827 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDC1P18827 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.31□□□□□ -0.12
SDC1P18827 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.31□□□□□ -0.12
SDC1P18827 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDC1P18827 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDC1P18827 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDC1P18827 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
SDC1P18827 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDC1P18827 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SDC1P18827 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.31□□□□□ -0.12
SDC1P18827 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDC1P18827 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
SDC1P18827 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDC1P18827 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SDC1P18827 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.31□□□□□ -0.12
SDC1P18827 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SDC1P18827 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.31□□□□□ -0.12
SDC1P18827 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.31□□□□□ -0.12
SDC1P18827 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC14.31□□□□□ -0.12
SDC1P18827 SERBP1P5-201ENST00000510079 1181 ntBASIC14.31□□□□□ -0.12
SDC1P18827 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
SDC1P18827 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.31□□□□□ -0.12
SDC1P18827 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.31□□□□□ -0.12
SDC1P18827 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.31□□□□□ -0.12
SDC1P18827 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
SDC1P18827 AL603764.1-201ENST00000636452 321 ntBASIC14.31□□□□□ -0.12
SDC1P18827 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDC1P18827 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDC1P18827 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SDC1P18827 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
SDC1P18827 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
SDC1P18827 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDC1P18827 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDC1P18827 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDC1P18827 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
SDC1P18827 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
SDC1P18827 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
SDC1P18827 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.31□□□□□ -0.12
SDC1P18827 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.31□□□□□ -0.12
SDC1P18827 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.3□□□□□ -0.12
SDC1P18827 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.3□□□□□ -0.12
SDC1P18827 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
SDC1P18827 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.3□□□□□ -0.12
SDC1P18827 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.3□□□□□ -0.12
SDC1P18827 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
SDC1P18827 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.3□□□□□ -0.12
SDC1P18827 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.3□□□□□ -0.12
SDC1P18827 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 AC005840.4-201ENST00000541242 2494 ntBASIC14.3□□□□□ -0.12
SDC1P18827 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.3□□□□□ -0.12
SDC1P18827 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC14.3□□□□□ -0.12
SDC1P18827 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.3□□□□□ -0.12
SDC1P18827 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SDC1P18827 GIMAP3P-201ENST00000495150 836 ntBASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms