Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
COL6A2P12110 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A2P12110 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A2P12110 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A2P12110 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
COL6A2P12110 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.88□□□□□ -0.03
COL6A2P12110 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.88□□□□□ -0.03
COL6A2P12110 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
COL6A2P12110 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.88□□□□□ -0.03
COL6A2P12110 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
COL6A2P12110 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
COL6A2P12110 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
COL6A2P12110 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
COL6A2P12110 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.88□□□□□ -0.03
COL6A2P12110 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.88□□□□□ -0.03
COL6A2P12110 MEP1AP4-201ENST00000423244 1087 ntBASIC14.88□□□□□ -0.03
COL6A2P12110 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.88□□□□□ -0.03
COL6A2P12110 VDAC1P7-201ENST00000462417 847 ntBASIC14.88□□□□□ -0.03
COL6A2P12110 SPDYE18-201ENST00000510091 1050 ntBASIC14.88□□□□□ -0.03
COL6A2P12110 IGHV3-42-201ENST00000520410 361 ntBASIC14.88□□□□□ -0.03
COL6A2P12110 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.88□□□□□ -0.03
COL6A2P12110 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 AC008738.7-201ENST00000609744 511 ntBASIC14.88□□□□□ -0.03
COL6A2P12110 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.88□□□□□ -0.03
COL6A2P12110 AC004840.1-201ENST00000636359 365 ntBASIC14.88□□□□□ -0.03
COL6A2P12110 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC14.88□□□□□ -0.03
COL6A2P12110 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.88□□□□□ -0.03
COL6A2P12110 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 AC022144.1-201ENST00000602255 1580 ntBASIC14.88□□□□□ -0.03
COL6A2P12110 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC14.88□□□□□ -0.03
COL6A2P12110 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
COL6A2P12110 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.88□□□□□ -0.03
COL6A2P12110 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A2P12110 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A2P12110 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.87□□□□□ -0.03
COL6A2P12110 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.87□□□□□ -0.03
COL6A2P12110 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.87□□□□□ -0.03
COL6A2P12110 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A2P12110 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A2P12110 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
COL6A2P12110 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 AC004890.2-204ENST00000481968 304 ntBASIC14.87□□□□□ -0.03
COL6A2P12110 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.87□□□□□ -0.03
COL6A2P12110 AC022616.1-201ENST00000518688 554 ntBASIC14.87□□□□□ -0.03
COL6A2P12110 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
COL6A2P12110 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A2P12110 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.87□□□□□ -0.03
COL6A2P12110 BRI3BPP1-201ENST00000594224 787 ntBASIC14.87□□□□□ -0.03
COL6A2P12110 AC093028.1-201ENST00000622998 982 ntBASIC14.87□□□□□ -0.03
COL6A2P12110 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A2P12110 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
COL6A2P12110 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
COL6A2P12110 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.87□□□□□ -0.03
COL6A2P12110 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A2P12110 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A2P12110 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A2P12110 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms