Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 TMPRSS13-202ENST00000445164 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 C1S-202ENST00000360817 2635 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 GRM4-203ENST00000455714 2574 ntTSL 2 BASIC11.69□□□□□ -0.54
CXCL1P09341 AL031719.1-201ENST00000623365 2587 ntBASIC11.69□□□□□ -0.54
CXCL1P09341 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
CXCL1P09341 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC11.69□□□□□ -0.54
CXCL1P09341 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC11.69□□□□□ -0.54
CXCL1P09341 AC004987.2-201ENST00000395959 1148 ntBASIC11.69□□□□□ -0.54
CXCL1P09341 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
CXCL1P09341 FALEC-201ENST00000416894 566 ntTSL 3 BASIC11.69□□□□□ -0.54
CXCL1P09341 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 AC018712.1-201ENST00000455767 687 ntBASIC11.69□□□□□ -0.54
CXCL1P09341 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC11.69□□□□□ -0.54
CXCL1P09341 RNPS1P1-201ENST00000507437 918 ntBASIC11.69□□□□□ -0.54
CXCL1P09341 MOK-208ENST00000519058 917 ntTSL 2 BASIC11.69□□□□□ -0.54
CXCL1P09341 POLD4-207ENST00000531239 584 ntTSL 2 BASIC11.69□□□□□ -0.54
CXCL1P09341 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC11.69□□□□□ -0.54
CXCL1P09341 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC11.69□□□□□ -0.54
CXCL1P09341 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC11.69□□□□□ -0.54
CXCL1P09341 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC11.69□□□□□ -0.54
CXCL1P09341 PAM16-215ENST00000577031 548 ntTSL 4 BASIC11.69□□□□□ -0.54
CXCL1P09341 MIR4751-201ENST00000578027 74 ntBASIC11.69□□□□□ -0.54
CXCL1P09341 TP73-AS1-207ENST00000624167 988 ntBASIC11.69□□□□□ -0.54
CXCL1P09341 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
CXCL1P09341 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 ADK-205ENST00000539909 1866 ntTSL 2 BASIC11.69□□□□□ -0.54
CXCL1P09341 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 ACADM-201ENST00000370834 2172 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 METAP1-201ENST00000296411 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC11.69□□□□□ -0.54
CXCL1P09341 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC11.69□□□□□ -0.54
CXCL1P09341 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 TCAF2-201ENST00000357344 2958 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 HTR5A-201ENST00000287907 2912 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 CNKSR3-204ENST00000479339 2023 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
CXCL1P09341 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC11.69□□□□□ -0.54
CXCL1P09341 GRIPAP1-215ENST00000622599 2881 ntTSL 5 BASIC11.69□□□□□ -0.54
CXCL1P09341 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
CXCL1P09341 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
CXCL1P09341 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
CXCL1P09341 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC11.68□□□□□ -0.54
CXCL1P09341 VSTM2A-201ENST00000302287 3401 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC11.68□□□□□ -0.54
CXCL1P09341 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC11.68□□□□□ -0.54
CXCL1P09341 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC11.68□□□□□ -0.54
CXCL1P09341 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC11.68□□□□□ -0.54
CXCL1P09341 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 AC140658.5-201ENST00000438532 169 ntBASIC11.68□□□□□ -0.54
CXCL1P09341 VN2R19P-201ENST00000442399 1052 ntBASIC11.68□□□□□ -0.54
CXCL1P09341 FAM210CP-201ENST00000445714 574 ntBASIC11.68□□□□□ -0.54
CXCL1P09341 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC11.68□□□□□ -0.54
CXCL1P09341 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC11.68□□□□□ -0.54
CXCL1P09341 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC11.68□□□□□ -0.54
CXCL1P09341 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC11.68□□□□□ -0.54
CXCL1P09341 AC096734.2-201ENST00000562054 433 ntBASIC11.68□□□□□ -0.54
CXCL1P09341 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC11.68□□□□□ -0.54
CXCL1P09341 PRELID1P1-202ENST00000567272 903 ntBASIC11.68□□□□□ -0.54
CXCL1P09341 PRR29-207ENST00000580752 458 ntTSL 3 BASIC11.68□□□□□ -0.54
CXCL1P09341 CLEC4GP1-201ENST00000596555 870 ntBASIC11.68□□□□□ -0.54
CXCL1P09341 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC11.68□□□□□ -0.54
CXCL1P09341 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CXCL1P09341 TCAM1P-207ENST00000485295 1537 ntBASIC11.68□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms