Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HOXD4P09016 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC13.71□□□□□ -0.21
HOXD4P09016 GPAA1P2-201ENST00000417923 928 ntBASIC13.71□□□□□ -0.21
HOXD4P09016 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HOXD4P09016 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC13.71□□□□□ -0.21
HOXD4P09016 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC13.71□□□□□ -0.21
HOXD4P09016 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC13.71□□□□□ -0.21
HOXD4P09016 RPL13AP20-201ENST00000459725 609 ntBASIC13.71□□□□□ -0.21
HOXD4P09016 TPI1-206ENST00000488464 791 ntTSL 5 BASIC13.71□□□□□ -0.21
HOXD4P09016 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HOXD4P09016 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HOXD4P09016 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC13.71□□□□□ -0.21
HOXD4P09016 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
HOXD4P09016 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC13.71□□□□□ -0.21
HOXD4P09016 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC13.71□□□□□ -0.21
HOXD4P09016 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
HOXD4P09016 AC243960.2-201ENST00000600996 747 ntBASIC13.71□□□□□ -0.21
HOXD4P09016 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC13.71□□□□□ -0.21
HOXD4P09016 AC138951.2-201ENST00000623455 1161 ntBASIC13.71□□□□□ -0.21
HOXD4P09016 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC13.71□□□□□ -0.21
HOXD4P09016 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC13.71□□□□□ -0.21
HOXD4P09016 AL139099.5-201ENST00000635274 300 ntBASIC13.71□□□□□ -0.21
HOXD4P09016 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC13.71□□□□□ -0.21
HOXD4P09016 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HOXD4P09016 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
HOXD4P09016 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC13.71□□□□□ -0.21
HOXD4P09016 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.71□□□□□ -0.21
HOXD4P09016 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HOXD4P09016 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
HOXD4P09016 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC13.71□□□□□ -0.22
HOXD4P09016 AC112504.1-201ENST00000623415 1841 ntBASIC13.71□□□□□ -0.22
HOXD4P09016 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
HOXD4P09016 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC13.71□□□□□ -0.22
HOXD4P09016 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13.71□□□□□ -0.22
HOXD4P09016 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
HOXD4P09016 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
HOXD4P09016 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.22
HOXD4P09016 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
HOXD4P09016 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
HOXD4P09016 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
HOXD4P09016 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.22
HOXD4P09016 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
HOXD4P09016 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
HOXD4P09016 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC13.7□□□□□ -0.22
HOXD4P09016 LRRC59-203ENST00000576448 1531 ntBASIC13.7□□□□□ -0.22
HOXD4P09016 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC13.7□□□□□ -0.22
HOXD4P09016 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.7□□□□□ -0.22
HOXD4P09016 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
HOXD4P09016 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC13.7□□□□□ -0.22
HOXD4P09016 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC13.7□□□□□ -0.22
HOXD4P09016 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC13.7□□□□□ -0.22
HOXD4P09016 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
HOXD4P09016 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC13.7□□□□□ -0.22
HOXD4P09016 AL139094.1-201ENST00000405549 1188 ntBASIC13.7□□□□□ -0.22
HOXD4P09016 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC13.7□□□□□ -0.22
HOXD4P09016 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC13.7□□□□□ -0.22
HOXD4P09016 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC13.7□□□□□ -0.22
HOXD4P09016 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC13.7□□□□□ -0.22
HOXD4P09016 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC13.7□□□□□ -0.22
HOXD4P09016 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC13.7□□□□□ -0.22
HOXD4P09016 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC13.7□□□□□ -0.22
HOXD4P09016 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC13.7□□□□□ -0.22
HOXD4P09016 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC13.7□□□□□ -0.22
HOXD4P09016 AC091271.1-201ENST00000611877 1162 ntBASIC13.7□□□□□ -0.22
HOXD4P09016 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC13.7□□□□□ -0.22
HOXD4P09016 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
HOXD4P09016 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
HOXD4P09016 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC13.7□□□□□ -0.22
HOXD4P09016 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC13.7□□□□□ -0.22
HOXD4P09016 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC13.7□□□□□ -0.22
HOXD4P09016 AMT-224ENST00000635808 1610 ntTSL 5 BASIC13.7□□□□□ -0.22
HOXD4P09016 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 ILF3-AS1-201ENST00000591501 1983 ntBASIC13.7□□□□□ -0.22
HOXD4P09016 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
HOXD4P09016 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
HOXD4P09016 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
HOXD4P09016 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD4P09016 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms