Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 HLA-DPB2-205ENST00000435074 1188 ntBASIC14.67□□□□□ -0.06
VPS4AQ9UN37 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 CROCCP4-201ENST00000457096 498 ntBASIC14.67□□□□□ -0.06
VPS4AQ9UN37 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 TIMM17BP1-201ENST00000545713 516 ntBASIC14.67□□□□□ -0.06
VPS4AQ9UN37 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 RRP7BP-205ENST00000566851 833 ntBASIC14.67□□□□□ -0.06
VPS4AQ9UN37 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 AC103810.3-201ENST00000583567 96 ntBASIC14.67□□□□□ -0.06
VPS4AQ9UN37 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 WFDC1-204ENST00000613603 549 ntBASIC14.67□□□□□ -0.06
VPS4AQ9UN37 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 AC232323.1-201ENST00000540724 2099 ntBASIC14.67□□□□□ -0.06
VPS4AQ9UN37 REXO1L5P-201ENST00000622260 2098 ntBASIC14.67□□□□□ -0.06
VPS4AQ9UN37 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
VPS4AQ9UN37 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 STX1A-203ENST00000395155 783 ntTSL 2 BASIC14.66□□□□□ -0.06
VPS4AQ9UN37 AL133267.1-201ENST00000398220 340 ntBASIC14.66□□□□□ -0.06
VPS4AQ9UN37 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms