Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL20A1Q9P218 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
COL20A1Q9P218 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL20A1Q9P218 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL20A1Q9P218 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL20A1Q9P218 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL20A1Q9P218 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.28
COL20A1Q9P218 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC16.83■□□□□ 0.28
COL20A1Q9P218 AC012441.2-201ENST00000444843 739 ntBASIC16.83■□□□□ 0.28
COL20A1Q9P218 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
COL20A1Q9P218 AC125604.1-201ENST00000496255 707 ntBASIC16.83■□□□□ 0.28
COL20A1Q9P218 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC16.83■□□□□ 0.28
COL20A1Q9P218 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL20A1Q9P218 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
COL20A1Q9P218 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
COL20A1Q9P218 RN7SL574P-201ENST00000581512 297 ntBASIC16.83■□□□□ 0.28
COL20A1Q9P218 AC008805.1-201ENST00000590892 364 ntBASIC16.83■□□□□ 0.28
COL20A1Q9P218 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC16.83■□□□□ 0.28
COL20A1Q9P218 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.83■□□□□ 0.28
COL20A1Q9P218 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.83■□□□□ 0.28
COL20A1Q9P218 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC16.83■□□□□ 0.28
COL20A1Q9P218 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL20A1Q9P218 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL20A1Q9P218 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL20A1Q9P218 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL20A1Q9P218 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC16.83■□□□□ 0.28
COL20A1Q9P218 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL20A1Q9P218 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL20A1Q9P218 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC16.82■□□□□ 0.28
COL20A1Q9P218 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC16.82■□□□□ 0.28
COL20A1Q9P218 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC16.82■□□□□ 0.28
COL20A1Q9P218 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.82■□□□□ 0.28
COL20A1Q9P218 AC144831.1-201ENST00000573312 2656 ntBASIC16.82■□□□□ 0.28
COL20A1Q9P218 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
COL20A1Q9P218 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
COL20A1Q9P218 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL20A1Q9P218 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL20A1Q9P218 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
COL20A1Q9P218 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL20A1Q9P218 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL20A1Q9P218 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL20A1Q9P218 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL20A1Q9P218 FAM58BP-201ENST00000439056 645 ntBASIC16.82■□□□□ 0.28
COL20A1Q9P218 RN7SL11P-201ENST00000471305 293 ntBASIC16.82■□□□□ 0.28
COL20A1Q9P218 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC16.82■□□□□ 0.28
COL20A1Q9P218 RNA5SP423-201ENST00000517127 109 ntBASIC16.82■□□□□ 0.28
COL20A1Q9P218 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC16.82■□□□□ 0.28
COL20A1Q9P218 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC16.82■□□□□ 0.28
COL20A1Q9P218 AC009779.1-201ENST00000551138 283 ntBASIC16.82■□□□□ 0.28
COL20A1Q9P218 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC16.82■□□□□ 0.28
COL20A1Q9P218 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
COL20A1Q9P218 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL20A1Q9P218 ARL16-210ENST00000574938 751 ntTSL 2 BASIC16.82■□□□□ 0.28
COL20A1Q9P218 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
COL20A1Q9P218 AF254983.2-201ENST00000612331 135 ntBASIC16.82■□□□□ 0.28
COL20A1Q9P218 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL20A1Q9P218 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL20A1Q9P218 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.82■□□□□ 0.28
COL20A1Q9P218 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL20A1Q9P218 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
COL20A1Q9P218 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL20A1Q9P218 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL20A1Q9P218 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC16.82■□□□□ 0.28
COL20A1Q9P218 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
COL20A1Q9P218 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL20A1Q9P218 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL20A1Q9P218 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL20A1Q9P218 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL20A1Q9P218 CYP4F23P-201ENST00000593402 1579 ntBASIC16.81■□□□□ 0.28
COL20A1Q9P218 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL20A1Q9P218 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL20A1Q9P218 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL20A1Q9P218 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL20A1Q9P218 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL20A1Q9P218 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL20A1Q9P218 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL20A1Q9P218 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 AL662890.1-201ENST00000396818 632 ntBASIC16.81■□□□□ 0.28
COL20A1Q9P218 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL20A1Q9P218 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC16.81■□□□□ 0.28
COL20A1Q9P218 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms