Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 AP001889.1-201ENST00000525414 633 ntBASIC16.06■□□□□ 0.16
SIX2Q9NPC8 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 AP001002.3-201ENST00000623482 206 ntBASIC16.06■□□□□ 0.16
SIX2Q9NPC8 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
SIX2Q9NPC8 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 FOS-202ENST00000535987 1402 ntTSL 2 BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 PTP4A1P2-201ENST00000546033 454 ntBASIC16.05■□□□□ 0.16
SIX2Q9NPC8 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 AC090505.1-201ENST00000430515 1834 ntBASIC16.05■□□□□ 0.16
SIX2Q9NPC8 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SIX2Q9NPC8 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 AC009093.2-202ENST00000620513 2079 ntBASIC16.04■□□□□ 0.16
SIX2Q9NPC8 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 AP003171.2-201ENST00000528208 925 ntBASIC16.04■□□□□ 0.16
SIX2Q9NPC8 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 VPS18-202ENST00000558474 873 ntTSL 3 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 RN7SL48P-201ENST00000579283 293 ntBASIC16.04■□□□□ 0.16
SIX2Q9NPC8 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 AC025048.6-201ENST00000634326 1161 ntBASIC16.04■□□□□ 0.16
SIX2Q9NPC8 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC16.04■□□□□ 0.16
SIX2Q9NPC8 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms