Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 AC055811.4-201ENST00000624039 1754 ntBASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 CHMP1AP1-201ENST00000445563 662 ntBASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 OARD1-212ENST00000482515 832 ntTSL 2 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 FTLP10-202ENST00000505798 471 ntBASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 AC073413.1-201ENST00000603927 732 ntBASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 AL606495.2-201ENST00000605867 535 ntBASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 AC138466.3-201ENST00000619983 221 ntBASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 AC112693.3-201ENST00000624819 1983 ntBASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRAIPQ9BWF2 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 HARS-202ENST00000415192 1401 ntTSL 2 BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 AC091804.1-201ENST00000486888 567 ntBASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 IGHV3OR16-16-201ENST00000563644 343 ntBASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 AL589935.2-201ENST00000616471 1231 ntBASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 SNX12-206ENST00000622259 661 ntTSL 5 BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC16.48■□□□□ 0.23
TRAIPQ9BWF2 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 CLUHP2-201ENST00000426660 1303 ntBASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
TRAIPQ9BWF2 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms