Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.64□□□□□ -0.23
USB1Q9BQ65 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 HIKESHI-201ENST00000278483 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 REC114-201ENST00000331090 927 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 AC026410.3-201ENST00000514280 936 ntBASIC13.64□□□□□ -0.23
USB1Q9BQ65 PTP4A1P2-201ENST00000546033 454 ntBASIC13.64□□□□□ -0.23
USB1Q9BQ65 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 AC132938.2-201ENST00000579188 680 ntBASIC13.64□□□□□ -0.23
USB1Q9BQ65 MIR4313-201ENST00000580760 101 ntBASIC13.64□□□□□ -0.23
USB1Q9BQ65 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 AC005972.3-201ENST00000606304 481 ntBASIC13.64□□□□□ -0.23
USB1Q9BQ65 MIR6752-201ENST00000618442 71 ntBASIC13.64□□□□□ -0.23
USB1Q9BQ65 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 AL591163.1-201ENST00000641757 987 ntBASIC13.64□□□□□ -0.23
USB1Q9BQ65 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 LINC02447-202ENST00000501888 2146 ntBASIC13.64□□□□□ -0.23
USB1Q9BQ65 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 ABI1-206ENST00000376140 1446 ntTSL 5 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
USB1Q9BQ65 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
USB1Q9BQ65 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
USB1Q9BQ65 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
USB1Q9BQ65 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
USB1Q9BQ65 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC13.63□□□□□ -0.23
USB1Q9BQ65 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
USB1Q9BQ65 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
USB1Q9BQ65 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC13.63□□□□□ -0.23
USB1Q9BQ65 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
USB1Q9BQ65 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
USB1Q9BQ65 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
USB1Q9BQ65 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
USB1Q9BQ65 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.63□□□□□ -0.23
USB1Q9BQ65 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
USB1Q9BQ65 FCAR-203ENST00000355524 1483 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
USB1Q9BQ65 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC13.63□□□□□ -0.23
USB1Q9BQ65 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
USB1Q9BQ65 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
USB1Q9BQ65 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
USB1Q9BQ65 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
USB1Q9BQ65 TEX30-203ENST00000376022 828 ntTSL 2 BASIC13.63□□□□□ -0.23
USB1Q9BQ65 NUS1P3-201ENST00000423502 862 ntBASIC13.63□□□□□ -0.23
USB1Q9BQ65 KRT18P64-201ENST00000434946 1219 ntBASIC13.63□□□□□ -0.23
USB1Q9BQ65 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC13.63□□□□□ -0.23
USB1Q9BQ65 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC13.63□□□□□ -0.23
USB1Q9BQ65 Z97198.1-201ENST00000452366 658 ntTSL 2 BASIC13.63□□□□□ -0.23
USB1Q9BQ65 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC13.63□□□□□ -0.23
USB1Q9BQ65 RNU6-775P-201ENST00000459318 96 ntBASIC13.63□□□□□ -0.23
USB1Q9BQ65 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
USB1Q9BQ65 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC13.63□□□□□ -0.23
USB1Q9BQ65 HNRNPA1P13-201ENST00000510646 963 ntBASIC13.63□□□□□ -0.23
USB1Q9BQ65 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC13.63□□□□□ -0.23
USB1Q9BQ65 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
USB1Q9BQ65 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
USB1Q9BQ65 RAB43P1-201ENST00000561790 589 ntBASIC13.63□□□□□ -0.23
USB1Q9BQ65 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms