Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC42Q96M95 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 PPP1R26P4-201ENST00000619065 3527 ntBASIC16.28■□□□□ 0.2
CCDC42Q96M95 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 AC125807.1-201ENST00000483097 614 ntBASIC16.28■□□□□ 0.2
CCDC42Q96M95 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 ZNF890P-202ENST00000530367 1156 ntBASIC16.28■□□□□ 0.2
CCDC42Q96M95 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 Z92544.3-201ENST00000624747 417 ntBASIC16.28■□□□□ 0.2
CCDC42Q96M95 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 USP4-203ENST00000415188 1454 ntTSL 3 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC42Q96M95 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC42Q96M95 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC42Q96M95 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC42Q96M95 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CCDC42Q96M95 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC42Q96M95 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC42Q96M95 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CCDC42Q96M95 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC42Q96M95 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC42Q96M95 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.27■□□□□ 0.2
CCDC42Q96M95 MVK-214ENST00000629016 1591 ntTSL 5 BASIC16.27■□□□□ 0.2
CCDC42Q96M95 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC42Q96M95 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC42Q96M95 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC16.27■□□□□ 0.2
CCDC42Q96M95 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC42Q96M95 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC42Q96M95 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC42Q96M95 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC42Q96M95 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC42Q96M95 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.27■□□□□ 0.2
CCDC42Q96M95 AP006288.1-201ENST00000446065 395 ntBASIC16.27■□□□□ 0.2
CCDC42Q96M95 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC42Q96M95 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CCDC42Q96M95 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC42Q96M95 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC42Q96M95 AC092337.1-201ENST00000568699 1129 ntBASIC16.27■□□□□ 0.2
CCDC42Q96M95 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
CCDC42Q96M95 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC16.27■□□□□ 0.2
CCDC42Q96M95 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC16.27■□□□□ 0.19
CCDC42Q96M95 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC42Q96M95 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC42Q96M95 AL359881.3-201ENST00000602640 1721 ntBASIC16.27■□□□□ 0.19
CCDC42Q96M95 FUK-202ENST00000378912 3925 ntTSL 2 BASIC16.27■□□□□ 0.19
CCDC42Q96M95 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC42Q96M95 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC42Q96M95 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
CCDC42Q96M95 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC42Q96M95 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.27■□□□□ 0.19
CCDC42Q96M95 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC42Q96M95 AL158070.2-201ENST00000623713 1621 ntBASIC16.27■□□□□ 0.19
CCDC42Q96M95 AGGF1P1-201ENST00000509500 2073 ntBASIC16.26■□□□□ 0.19
CCDC42Q96M95 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC42Q96M95 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC42Q96M95 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC42Q96M95 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC42Q96M95 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC42Q96M95 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC42Q96M95 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms