Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 FAM86GP-201ENST00000448322 971 ntBASIC11.33□□□□□ -0.6
LINC00477Q96M19 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 RAB35-202ENST00000534951 939 ntTSL 2 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 AC100757.3-201ENST00000622361 1406 ntBASIC11.33□□□□□ -0.6
LINC00477Q96M19 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
LINC00477Q96M19 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC11.33□□□□□ -0.6
LINC00477Q96M19 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
LINC00477Q96M19 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC11.32□□□□□ -0.6
LINC00477Q96M19 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC11.32□□□□□ -0.6
LINC00477Q96M19 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC11.32□□□□□ -0.6
LINC00477Q96M19 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC11.32□□□□□ -0.6
LINC00477Q96M19 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC11.32□□□□□ -0.6
LINC00477Q96M19 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
LINC00477Q96M19 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
LINC00477Q96M19 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC11.32□□□□□ -0.6
LINC00477Q96M19 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC11.32□□□□□ -0.6
LINC00477Q96M19 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC11.32□□□□□ -0.6
LINC00477Q96M19 RPL13AP25-201ENST00000484130 612 ntBASIC11.32□□□□□ -0.6
LINC00477Q96M19 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC11.32□□□□□ -0.6
LINC00477Q96M19 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC11.32□□□□□ -0.6
LINC00477Q96M19 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC11.32□□□□□ -0.6
LINC00477Q96M19 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC11.32□□□□□ -0.6
LINC00477Q96M19 AC036164.1-201ENST00000570544 333 ntBASIC11.32□□□□□ -0.6
LINC00477Q96M19 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 AL158212.4-201ENST00000624062 1286 ntBASIC11.32□□□□□ -0.6
LINC00477Q96M19 AC104581.4-201ENST00000623126 3052 ntBASIC11.32□□□□□ -0.6
LINC00477Q96M19 TKT-201ENST00000296289 1931 ntTSL 5 BASIC11.32□□□□□ -0.6
LINC00477Q96M19 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC11.32□□□□□ -0.6
LINC00477Q96M19 AC117489.1-201ENST00000625169 3217 ntBASIC11.32□□□□□ -0.6
LINC00477Q96M19 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC11.32□□□□□ -0.6
LINC00477Q96M19 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC11.32□□□□□ -0.6
LINC00477Q96M19 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC11.32□□□□□ -0.6
LINC00477Q96M19 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 AC093525.8-201ENST00000624099 1342 ntBASIC11.32□□□□□ -0.6
LINC00477Q96M19 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
LINC00477Q96M19 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC11.32□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms