Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 AC007274.2-201ENST00000421675 662 ntBASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 AL157407.1-201ENST00000435784 904 ntBASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 EEF1DP6-201ENST00000449232 372 ntBASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 MIR5572-201ENST00000583188 137 ntBASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 ING5-213ENST00000636051 4199 ntTSL 5 BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHROOM1Q2M3G4 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 SF1-209ENST00000433274 2317 ntTSL 2 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 MPV17-204ENST00000399052 749 ntTSL 4 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 CEP164P1-201ENST00000455142 418 ntBASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 SUPT4H1P2-201ENST00000501248 353 ntBASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 CFL1-214ENST00000534769 758 ntTSL 2 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 PAM16-211ENST00000575848 518 ntTSL 3 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 AC007718.1-201ENST00000621078 280 ntBASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 DDX5-235ENST00000630471 473 ntTSL 4 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 WASH3P-207ENST00000560956 1394 ntBASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM1Q2M3G4 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 TLE1P1-201ENST00000422965 589 ntBASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 COG4-212ENST00000564653 590 ntTSL 5 BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 MIR4722-201ENST00000578292 60 ntBASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 BX088702.1-201ENST00000610784 235 ntBASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM1Q2M3G4 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms