Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.95□□□□□ -0.18
RNF4P78317 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
RNF4P78317 YBX1P6-201ENST00000442962 1002 ntBASIC13.95□□□□□ -0.18
RNF4P78317 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 FTLP10-202ENST00000505798 471 ntBASIC13.95□□□□□ -0.18
RNF4P78317 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC13.95□□□□□ -0.18
RNF4P78317 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC13.95□□□□□ -0.18
RNF4P78317 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC13.95□□□□□ -0.18
RNF4P78317 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC13.95□□□□□ -0.18
RNF4P78317 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC13.95□□□□□ -0.18
RNF4P78317 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC13.95□□□□□ -0.18
RNF4P78317 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC13.95□□□□□ -0.18
RNF4P78317 AC023090.2-201ENST00000625182 2110 ntBASIC13.95□□□□□ -0.18
RNF4P78317 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
RNF4P78317 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
RNF4P78317 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC13.95□□□□□ -0.18
RNF4P78317 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC13.95□□□□□ -0.18
RNF4P78317 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 AC144831.1-201ENST00000573312 2656 ntBASIC13.95□□□□□ -0.18
RNF4P78317 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
RNF4P78317 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RNF4P78317 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.94□□□□□ -0.18
RNF4P78317 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC13.94□□□□□ -0.18
RNF4P78317 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC13.94□□□□□ -0.18
RNF4P78317 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC13.94□□□□□ -0.18
RNF4P78317 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.94□□□□□ -0.18
RNF4P78317 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC13.94□□□□□ -0.18
RNF4P78317 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC13.94□□□□□ -0.18
RNF4P78317 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC13.94□□□□□ -0.18
RNF4P78317 PFN2-215ENST00000497148 743 ntTSL 4 BASIC13.94□□□□□ -0.18
RNF4P78317 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.94□□□□□ -0.18
RNF4P78317 RNA5SP412-201ENST00000516234 123 ntBASIC13.94□□□□□ -0.18
RNF4P78317 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.94□□□□□ -0.18
RNF4P78317 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
RNF4P78317 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
RNF4P78317 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.94□□□□□ -0.18
RNF4P78317 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC13.94□□□□□ -0.18
RNF4P78317 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
RNF4P78317 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
RNF4P78317 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC13.94□□□□□ -0.18
RNF4P78317 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC13.94□□□□□ -0.18
RNF4P78317 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
RNF4P78317 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
RNF4P78317 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC13.93□□□□□ -0.18
RNF4P78317 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 MYB-201ENST00000316528 3571 ntTSL 5 BASIC13.93□□□□□ -0.18
RNF4P78317 MYB-241ENST00000616088 3573 ntTSL 5 BASIC13.93□□□□□ -0.18
RNF4P78317 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.93□□□□□ -0.18
RNF4P78317 CICP14-201ENST00000629111 2732 ntBASIC13.93□□□□□ -0.18
RNF4P78317 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC13.93□□□□□ -0.18
RNF4P78317 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.93□□□□□ -0.18
RNF4P78317 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
RNF4P78317 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.93□□□□□ -0.18
RNF4P78317 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
RNF4P78317 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC13.93□□□□□ -0.18
RNF4P78317 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
RNF4P78317 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
RNF4P78317 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms