Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.43□□□□□ -0.1
MSX2P35548 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC14.43□□□□□ -0.1
MSX2P35548 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC14.43□□□□□ -0.1
MSX2P35548 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.43□□□□□ -0.1
MSX2P35548 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
MSX2P35548 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
MSX2P35548 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
MSX2P35548 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
MSX2P35548 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MSX2P35548 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
MSX2P35548 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC14.43□□□□□ -0.1
MSX2P35548 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.43□□□□□ -0.1
MSX2P35548 FAM90A12P-201ENST00000519497 2375 ntBASIC14.42□□□□□ -0.1
MSX2P35548 FAM90A24P-201ENST00000520792 2369 ntBASIC14.42□□□□□ -0.1
MSX2P35548 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.42□□□□□ -0.1
MSX2P35548 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
MSX2P35548 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
MSX2P35548 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC14.42□□□□□ -0.1
MSX2P35548 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 TIMM8BP1-201ENST00000452384 211 ntBASIC14.42□□□□□ -0.1
MSX2P35548 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.42□□□□□ -0.1
MSX2P35548 RPL13AP23-201ENST00000480739 586 ntBASIC14.42□□□□□ -0.1
MSX2P35548 AC069335.1-201ENST00000489972 472 ntBASIC14.42□□□□□ -0.1
MSX2P35548 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC14.42□□□□□ -0.1
MSX2P35548 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC14.42□□□□□ -0.1
MSX2P35548 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC14.42□□□□□ -0.1
MSX2P35548 SLC25A6P4-201ENST00000586535 553 ntBASIC14.42□□□□□ -0.1
MSX2P35548 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.42□□□□□ -0.1
MSX2P35548 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.42□□□□□ -0.1
MSX2P35548 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC14.42□□□□□ -0.1
MSX2P35548 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC14.42□□□□□ -0.1
MSX2P35548 AF228730.6-201ENST00000641497 218 ntBASIC14.42□□□□□ -0.1
MSX2P35548 AC084121.3-201ENST00000641716 218 ntBASIC14.42□□□□□ -0.1
MSX2P35548 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.42□□□□□ -0.1
MSX2P35548 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
MSX2P35548 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC14.42□□□□□ -0.1
MSX2P35548 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 AC131212.3-201ENST00000624087 4219 ntBASIC14.42□□□□□ -0.1
MSX2P35548 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC14.42□□□□□ -0.1
MSX2P35548 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC14.42□□□□□ -0.1
MSX2P35548 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
MSX2P35548 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.42□□□□□ -0.1
MSX2P35548 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MSX2P35548 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
MSX2P35548 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC14.42□□□□□ -0.1
MSX2P35548 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC14.41□□□□□ -0.1
MSX2P35548 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
MSX2P35548 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
MSX2P35548 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
MSX2P35548 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC14.41□□□□□ -0.1
MSX2P35548 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
MSX2P35548 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
MSX2P35548 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
MSX2P35548 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
MSX2P35548 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC14.41□□□□□ -0.1
MSX2P35548 SPDYE17-201ENST00000412399 783 ntBASIC14.41□□□□□ -0.1
MSX2P35548 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 SLED1-202ENST00000512051 380 ntBASIC14.41□□□□□ -0.1
MSX2P35548 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 RPL18-209ENST00000550645 463 ntTSL 5 BASIC14.41□□□□□ -0.1
MSX2P35548 RPL18-214ENST00000552588 559 ntTSL 3 BASIC14.41□□□□□ -0.1
MSX2P35548 KRT8P23-201ENST00000560090 1207 ntBASIC14.41□□□□□ -0.1
MSX2P35548 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.41□□□□□ -0.1
MSX2P35548 AC106730.1-201ENST00000566722 1090 ntBASIC14.41□□□□□ -0.1
MSX2P35548 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MSX2P35548 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms