Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC17.51■□□□□ 0.39
COL4A5P29400 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC17.51■□□□□ 0.39
COL4A5P29400 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC17.51■□□□□ 0.39
COL4A5P29400 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
COL4A5P29400 TRMT112P3-201ENST00000580149 358 ntBASIC17.51■□□□□ 0.39
COL4A5P29400 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL4A5P29400 AL139339.2-201ENST00000608063 657 ntBASIC17.51■□□□□ 0.39
COL4A5P29400 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL4A5P29400 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL4A5P29400 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC17.51■□□□□ 0.39
COL4A5P29400 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
COL4A5P29400 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL4A5P29400 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL4A5P29400 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL4A5P29400 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A5P29400 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A5P29400 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A5P29400 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A5P29400 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A5P29400 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
COL4A5P29400 AC136621.1-201ENST00000624017 2304 ntBASIC17.5■□□□□ 0.39
COL4A5P29400 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A5P29400 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC17.5■□□□□ 0.39
COL4A5P29400 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC17.5■□□□□ 0.39
COL4A5P29400 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A5P29400 RNVU1-8-201ENST00000364272 125 ntBASIC17.5■□□□□ 0.39
COL4A5P29400 SURF4-203ENST00000371991 715 ntTSL 3 BASIC17.5■□□□□ 0.39
COL4A5P29400 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC17.5■□□□□ 0.39
COL4A5P29400 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A5P29400 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
COL4A5P29400 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC17.5■□□□□ 0.39
COL4A5P29400 AC018695.6-201ENST00000614011 534 ntBASIC17.5■□□□□ 0.39
COL4A5P29400 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC17.5■□□□□ 0.39
COL4A5P29400 AC026691.1-201ENST00000602502 2017 ntBASIC17.5■□□□□ 0.39
COL4A5P29400 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A5P29400 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A5P29400 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A5P29400 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A5P29400 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
COL4A5P29400 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A5P29400 AL591122.2-201ENST00000624125 1853 ntBASIC17.5■□□□□ 0.39
COL4A5P29400 AC026471.1-201ENST00000564629 3026 ntBASIC17.5■□□□□ 0.39
COL4A5P29400 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A5P29400 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL4A5P29400 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC17.49■□□□□ 0.39
COL4A5P29400 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
COL4A5P29400 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A5P29400 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A5P29400 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC17.49■□□□□ 0.39
COL4A5P29400 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
COL4A5P29400 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A5P29400 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A5P29400 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A5P29400 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
COL4A5P29400 MIR566-201ENST00000385187 94 ntBASIC17.49■□□□□ 0.39
COL4A5P29400 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A5P29400 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC17.49■□□□□ 0.39
COL4A5P29400 RNA5SP406-201ENST00000516106 112 ntBASIC17.49■□□□□ 0.39
COL4A5P29400 ABHD17AP9-201ENST00000561925 548 ntBASIC17.49■□□□□ 0.39
COL4A5P29400 AC010632.2-201ENST00000588369 1224 ntBASIC17.49■□□□□ 0.39
COL4A5P29400 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC17.49■□□□□ 0.39
COL4A5P29400 CTBP2P8-201ENST00000422584 1330 ntBASIC17.49■□□□□ 0.39
COL4A5P29400 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A5P29400 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A5P29400 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A5P29400 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A5P29400 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
COL4A5P29400 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A5P29400 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC17.49■□□□□ 0.39
COL4A5P29400 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A5P29400 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A5P29400 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A5P29400 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A5P29400 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
COL4A5P29400 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL4A5P29400 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A5P29400 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A5P29400 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A5P29400 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
COL4A5P29400 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A5P29400 AC018638.5-201ENST00000450885 754 ntBASIC17.48■□□□□ 0.39
COL4A5P29400 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC17.48■□□□□ 0.39
COL4A5P29400 SCARNA12-201ENST00000459155 270 ntBASIC17.48■□□□□ 0.39
COL4A5P29400 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC17.48■□□□□ 0.39
COL4A5P29400 OR2A1-AS1-210ENST00000496968 531 ntBASIC17.48■□□□□ 0.39
COL4A5P29400 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC17.48■□□□□ 0.39
COL4A5P29400 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC17.48■□□□□ 0.39
COL4A5P29400 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC17.48■□□□□ 0.39
COL4A5P29400 DRG2-220ENST00000583355 891 ntTSL 3 BASIC17.48■□□□□ 0.39
COL4A5P29400 AL133467.4-201ENST00000602953 725 ntBASIC17.48■□□□□ 0.39
COL4A5P29400 PLS3-210ENST00000626746 216 ntTSL 4 BASIC17.48■□□□□ 0.39
COL4A5P29400 AC084018.2-201ENST00000613093 2607 ntBASIC17.48■□□□□ 0.39
COL4A5P29400 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC17.48■□□□□ 0.39
COL4A5P29400 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
COL4A5P29400 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC17.48■□□□□ 0.39
COL4A5P29400 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A5P29400 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A5P29400 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL4A5P29400 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.48■□□□□ 0.39
COL4A5P29400 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms