Protein–RNA interactions for Protein: P19838

NFKB1, Nuclear factor NF-kappa-B p105 subunit, humanhuman

Predictions only

Length 968 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1P19838 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.31■□□□□ 0.04
NFKB1P19838 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
NFKB1P19838 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 AC097359.2-201ENST00000604992 2389 ntBASIC15.31■□□□□ 0.04
NFKB1P19838 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
NFKB1P19838 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 MGST3-203ENST00000367885 680 ntTSL 2 BASIC15.31■□□□□ 0.04
NFKB1P19838 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
NFKB1P19838 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
NFKB1P19838 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
NFKB1P19838 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.31■□□□□ 0.04
NFKB1P19838 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC15.31■□□□□ 0.04
NFKB1P19838 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 TDH-203ENST00000531764 1110 ntBASIC15.31■□□□□ 0.04
NFKB1P19838 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.31■□□□□ 0.04
NFKB1P19838 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC15.31■□□□□ 0.04
NFKB1P19838 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.31■□□□□ 0.04
NFKB1P19838 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC15.31■□□□□ 0.04
NFKB1P19838 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.31■□□□□ 0.04
NFKB1P19838 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
NFKB1P19838 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
NFKB1P19838 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
NFKB1P19838 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NFKB1P19838 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
NFKB1P19838 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
NFKB1P19838 OR2I1P-209ENST00000641730 5365 ntBASIC15.3■□□□□ 0.04
NFKB1P19838 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NFKB1P19838 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
NFKB1P19838 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NFKB1P19838 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
NFKB1P19838 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
NFKB1P19838 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NFKB1P19838 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC15.3■□□□□ 0.04
NFKB1P19838 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NFKB1P19838 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NFKB1P19838 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NFKB1P19838 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
NFKB1P19838 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC15.3■□□□□ 0.04
NFKB1P19838 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
NFKB1P19838 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
NFKB1P19838 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NFKB1P19838 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NFKB1P19838 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.3■□□□□ 0.04
NFKB1P19838 BAATP1-201ENST00000412284 1225 ntBASIC15.3■□□□□ 0.04
NFKB1P19838 ACTG1P3-201ENST00000431775 1114 ntBASIC15.3■□□□□ 0.04
NFKB1P19838 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC15.3■□□□□ 0.04
NFKB1P19838 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
NFKB1P19838 AC012441.1-201ENST00000446669 685 ntBASIC15.3■□□□□ 0.04
NFKB1P19838 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC15.3■□□□□ 0.04
NFKB1P19838 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.3■□□□□ 0.04
NFKB1P19838 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC15.3■□□□□ 0.04
NFKB1P19838 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
NFKB1P19838 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
NFKB1P19838 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NFKB1P19838 AP001267.2-201ENST00000532619 2086 ntBASIC15.3■□□□□ 0.04
NFKB1P19838 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.3■□□□□ 0.04
NFKB1P19838 AC134312.5-201ENST00000568031 1313 ntBASIC15.3■□□□□ 0.04
NFKB1P19838 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NFKB1P19838 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.3■□□□□ 0.04
NFKB1P19838 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC15.3■□□□□ 0.04
NFKB1P19838 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC15.3■□□□□ 0.04
NFKB1P19838 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC15.3■□□□□ 0.04
NFKB1P19838 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC15.3■□□□□ 0.04
NFKB1P19838 AC244517.3-201ENST00000616254 1235 ntBASIC15.3■□□□□ 0.04
NFKB1P19838 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.3■□□□□ 0.04
NFKB1P19838 MX1-218ENST00000619682 1980 ntTSL 5 BASIC15.3■□□□□ 0.04
NFKB1P19838 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.3■□□□□ 0.04
NFKB1P19838 AC026748.1-201ENST00000624349 3251 ntBASIC15.3■□□□□ 0.04
NFKB1P19838 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.3■□□□□ 0.04
NFKB1P19838 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
NFKB1P19838 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC15.3■□□□□ 0.04
NFKB1P19838 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
NFKB1P19838 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
NFKB1P19838 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
NFKB1P19838 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms