Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC18.96■□□□□ 0.63
NPHP1O15259 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC18.96■□□□□ 0.63
NPHP1O15259 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC18.96■□□□□ 0.63
NPHP1O15259 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC18.96■□□□□ 0.63
NPHP1O15259 AC004466.1-201ENST00000599515 1080 ntBASIC18.96■□□□□ 0.63
NPHP1O15259 BNIP3P13-201ENST00000599968 566 ntBASIC18.96■□□□□ 0.63
NPHP1O15259 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
NPHP1O15259 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
NPHP1O15259 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
NPHP1O15259 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC18.96■□□□□ 0.63
NPHP1O15259 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
NPHP1O15259 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC18.96■□□□□ 0.63
NPHP1O15259 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
NPHP1O15259 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC18.96■□□□□ 0.63
NPHP1O15259 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NPHP1O15259 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
NPHP1O15259 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NPHP1O15259 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NPHP1O15259 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.62
NPHP1O15259 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC18.95■□□□□ 0.62
NPHP1O15259 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC18.95■□□□□ 0.62
NPHP1O15259 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.95■□□□□ 0.62
NPHP1O15259 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
NPHP1O15259 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC18.95■□□□□ 0.62
NPHP1O15259 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
NPHP1O15259 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC18.95■□□□□ 0.62
NPHP1O15259 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC18.95■□□□□ 0.62
NPHP1O15259 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC18.95■□□□□ 0.62
NPHP1O15259 RN7SL574P-201ENST00000581512 297 ntBASIC18.95■□□□□ 0.62
NPHP1O15259 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC18.95■□□□□ 0.62
NPHP1O15259 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC18.95■□□□□ 0.62
NPHP1O15259 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
NPHP1O15259 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC18.95■□□□□ 0.62
NPHP1O15259 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC18.95■□□□□ 0.62
NPHP1O15259 AL157791.1-201ENST00000553667 1699 ntBASIC18.95■□□□□ 0.62
NPHP1O15259 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 AC026691.1-201ENST00000602502 2017 ntBASIC18.95■□□□□ 0.62
NPHP1O15259 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NPHP1O15259 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC18.94■□□□□ 0.62
NPHP1O15259 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC18.94■□□□□ 0.62
NPHP1O15259 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NPHP1O15259 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
NPHP1O15259 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC18.94■□□□□ 0.62
NPHP1O15259 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC18.94■□□□□ 0.62
NPHP1O15259 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NPHP1O15259 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NPHP1O15259 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
NPHP1O15259 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
NPHP1O15259 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC18.94■□□□□ 0.62
NPHP1O15259 DBET-201ENST00000630918 3363 ntBASIC18.94■□□□□ 0.62
NPHP1O15259 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC18.94■□□□□ 0.62
NPHP1O15259 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.94■□□□□ 0.62
NPHP1O15259 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NPHP1O15259 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
NPHP1O15259 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
NPHP1O15259 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC18.94■□□□□ 0.62
NPHP1O15259 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NPHP1O15259 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
NPHP1O15259 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
NPHP1O15259 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
NPHP1O15259 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.94■□□□□ 0.62
NPHP1O15259 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC18.94■□□□□ 0.62
NPHP1O15259 AC253536.4-201ENST00000440539 267 ntBASIC18.94■□□□□ 0.62
NPHP1O15259 MESTP3-201ENST00000503460 968 ntBASIC18.94■□□□□ 0.62
NPHP1O15259 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC18.94■□□□□ 0.62
NPHP1O15259 AC090857.1-201ENST00000527400 390 ntBASIC18.94■□□□□ 0.62
NPHP1O15259 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC18.94■□□□□ 0.62
NPHP1O15259 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC18.94■□□□□ 0.62
NPHP1O15259 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC18.94■□□□□ 0.62
NPHP1O15259 PRKXP1-201ENST00000561423 1122 ntBASIC18.94■□□□□ 0.62
NPHP1O15259 AL133499.1-201ENST00000596207 608 ntBASIC18.94■□□□□ 0.62
NPHP1O15259 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC18.94■□□□□ 0.62
NPHP1O15259 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
NPHP1O15259 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC18.94■□□□□ 0.62
NPHP1O15259 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NPHP1O15259 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC18.94■□□□□ 0.62
NPHP1O15259 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms