Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
SMKR1H3BMG3 NUTM2HP-201ENST00000442076 2498 ntBASIC11.07□□□□□ -0.64
SMKR1H3BMG3 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC11.07□□□□□ -0.64
SMKR1H3BMG3 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
SMKR1H3BMG3 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
SMKR1H3BMG3 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC11.07□□□□□ -0.64
SMKR1H3BMG3 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC11.07□□□□□ -0.64
SMKR1H3BMG3 MX1-218ENST00000619682 1980 ntTSL 5 BASIC11.07□□□□□ -0.64
SMKR1H3BMG3 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 ZBTB45P1-201ENST00000452761 1456 ntBASIC11.06□□□□□ -0.64
SMKR1H3BMG3 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 AC002056.1-201ENST00000395613 760 ntBASIC11.06□□□□□ -0.64
SMKR1H3BMG3 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 CBR1-202ENST00000399191 838 ntTSL 3 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 AC099522.2-201ENST00000607001 744 ntBASIC11.06□□□□□ -0.64
SMKR1H3BMG3 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 AC012313.10-201ENST00000623509 926 ntBASIC11.06□□□□□ -0.64
SMKR1H3BMG3 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 AL354702.1-201ENST00000442006 1960 ntBASIC11.06□□□□□ -0.64
SMKR1H3BMG3 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC11.06□□□□□ -0.64
SMKR1H3BMG3 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
SMKR1H3BMG3 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC11.05□□□□□ -0.64
SMKR1H3BMG3 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC11.05□□□□□ -0.64
SMKR1H3BMG3 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
SMKR1H3BMG3 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
SMKR1H3BMG3 LILRP1-201ENST00000444199 1370 ntBASIC11.05□□□□□ -0.64
SMKR1H3BMG3 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC11.05□□□□□ -0.64
SMKR1H3BMG3 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
SMKR1H3BMG3 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
SMKR1H3BMG3 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
SMKR1H3BMG3 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
SMKR1H3BMG3 TSN-212ENST00000536142 3328 ntTSL 2 BASIC11.05□□□□□ -0.64
SMKR1H3BMG3 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
SMKR1H3BMG3 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
SMKR1H3BMG3 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
SMKR1H3BMG3 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
SMKR1H3BMG3 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
SMKR1H3BMG3 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC11.05□□□□□ -0.64
SMKR1H3BMG3 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC11.05□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms