Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 ZACNP1-201ENST00000612259 710 ntBASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SSX2IPQ9Y2D8 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 HSPB1P2-201ENST00000448722 546 ntBASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 AC126915.1-201ENST00000522847 1038 ntBASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 KC6-205ENST00000599934 556 ntTSL 4 BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 AL096828.3-201ENST00000615354 462 ntBASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 GOLGA8DP-202ENST00000341390 2184 ntBASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SSX2IPQ9Y2D8 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 AL023775.1-201ENST00000454907 1746 ntBASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 BX284668.4-201ENST00000453917 508 ntBASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 NCK2-206ENST00000522586 490 ntTSL 5 BASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 RN7SL713P-201ENST00000582127 302 ntBASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 PPA1-206ENST00000625364 644 ntTSL 5 BASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SSX2IPQ9Y2D8 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms