Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 COQ6-210ENST00000554920 649 ntTSL 3 BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 AC120045.2-201ENST00000567334 178 ntBASIC15.57■□□□□ 0.08
PCDH9Q9HC56 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 LINC01230-201ENST00000625222 3017 ntBASIC15.57■□□□□ 0.08
PCDH9Q9HC56 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PCDH9Q9HC56 MX1-218ENST00000619682 1980 ntTSL 5 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 AC152010.1-201ENST00000415779 2006 ntBASIC15.56■□□□□ 0.08
PCDH9Q9HC56 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 AC006504.5-208ENST00000588784 2401 ntBASIC15.56■□□□□ 0.08
PCDH9Q9HC56 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 DGCR5-201ENST00000399539 862 ntBASIC15.56■□□□□ 0.08
PCDH9Q9HC56 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 AL359711.2-201ENST00000563105 872 ntBASIC15.56■□□□□ 0.08
PCDH9Q9HC56 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 AC027307.3-201ENST00000594262 1100 ntBASIC15.56■□□□□ 0.08
PCDH9Q9HC56 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 AC133539.2-201ENST00000604757 467 ntBASIC15.56■□□□□ 0.08
PCDH9Q9HC56 AC093813.1-201ENST00000605066 256 ntBASIC15.56■□□□□ 0.08
PCDH9Q9HC56 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 AL354702.1-201ENST00000442006 1960 ntBASIC15.56■□□□□ 0.08
PCDH9Q9HC56 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PCDH9Q9HC56 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PCDH9Q9HC56 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 138.8 ms